View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10951_high_4 (Length: 555)
Name: NF10951_high_4
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_high_4 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 17831751 - 17831224
Alignment:
| Q |
1 |
gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagggagataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831751 |
gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatcttaagcgttggagagggagataaa |
17831652 |
T |
|
| Q |
101 |
ctgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaag |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831651 |
ctgagaataatgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaag |
17831552 |
T |
|
| Q |
201 |
ggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831551 |
ggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaaca |
17831452 |
T |
|
| Q |
301 |
gaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctctggagaagttgaattgtgatg |
400 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831451 |
gaagaagcatcgtcgatgaagggagagagaaacgacgaaagatttcggttcatattacgatgacatctttctctttctctggagaagttgaattgtgatg |
17831352 |
T |
|
| Q |
401 |
gtttctgtgggtcggaatcacgattgcggcggagatgaaatggccaaatttggcgccgtcgcgggagagagaagagggactgaaaatggaagatgaattt |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831351 |
gtttctgtgggtcggaatcacggttgcggcggagatgaaatggccagatttggcgccgccacgggagagagaagagggactgaaaatggaagatgaattt |
17831252 |
T |
|
| Q |
501 |
ctcagatcagagaaaaatggcgtgatag |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17831251 |
ctcagatcagagaaaaatggcgtgatag |
17831224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 7135785 - 7135282
Alignment:
| Q |
1 |
gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagggagataaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||| |
|
|
| T |
7135785 |
gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaagcgttggagagggagaaaaa |
7135686 |
T |
|
| Q |
101 |
ctgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135685 |
atgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaa---------------- |
7135602 |
T |
|
| Q |
201 |
ggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
7135601 |
-----aactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagagcattaagtatgatggatgtttgagatttagcaaca |
7135507 |
T |
|
| Q |
301 |
gaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctctggagaagttgaattgtgatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135506 |
gaagaagcattgttgatgaagggagagagaaacgacggaagatttcggttcatattacgatgacatctttctctttctctggagaagttgaattgtgatg |
7135407 |
T |
|
| Q |
401 |
gtttctgtgggtcggaatcacgattgcggcggagatgaaatggccaaatttggcgccgtcgcgggagagagaagagggactgaaaatggaagatgaattt |
500 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135406 |
gtttctgtgggtcagaatcacggttacggcggagatgaaatggccagatttggtgccgctacaggagagagaagagggactgaaaatggaagatgaattt |
7135307 |
T |
|
| Q |
501 |
ctcagatcagagaaaaatggcgtga |
525 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
7135306 |
ctcatatcagagaaaaatggcgtga |
7135282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 52525386 - 52525515
Alignment:
| Q |
108 |
tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaatt--catagaaagggtaa |
205 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
52525386 |
tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaactgaaattcagagaaacgaaattcaatttctatagaaagggtaa |
52525485 |
T |
|
| Q |
206 |
aactattaccttgagagaaaattcacaaaa |
235 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
52525486 |
aacgattaccttgagagaaaattcacaaaa |
52525515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 22292156 - 22292316
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg |
276 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| | |||||||||||| | ||||| | |||||||||| |
|
|
| T |
22292156 |
aaacacaattcaatacatagaaagggaaaagcgattaccttgagagaaacttcgcaaaattagcaaatctgaacagtggtggaagggagcattaagcata |
22292255 |
T |
|
| Q |
277 |
atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatg |
337 |
Q |
| |
|
|||||||| | ||||| |||||| | |||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
22292256 |
atggatgtcttagattcagcaacgggagaagctttgttgatgaacggagagagcaacgatg |
22292316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52525327 - 52525386
Alignment:
| Q |
1 |
gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttt |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
52525327 |
gtgaaagtgaaaagatgaacaattttgggaatgcctgaacattcaacacctccaattttt |
52525386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 33865939 - 33865884
Alignment:
| Q |
465 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33865939 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
33865884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 37362214 - 37362273
Alignment:
| Q |
203 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
262 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
37362214 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
37362273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 11075226 - 11075171
Alignment:
| Q |
465 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11075226 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
11075171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 10093117 - 10093043
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
251 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
10093117 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
10093043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 33044908 - 33044989
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
258 |
Q |
| |
|
||||| ||||||||||||||||| || ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
33044908 |
aaacacaattcaattcatagaaaaggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
33044989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 465 - 520
Target Start/End: Original strand, 23216755 - 23216810
Alignment:
| Q |
465 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23216755 |
gagagagaagagggactgaaaatggaagatgaatttctcatatcagagaaaaatgg |
23216810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 520
Target Start/End: Original strand, 30765777 - 30765831
Alignment:
| Q |
465 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
520 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
30765777 |
gagagagaagagggactgaaa-tggaagatgactttctctcatcagagaaaaatgg |
30765831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 17682425 - 17682380
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagag |
222 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
17682425 |
aaacacaattcaattcatagaaagggaaaaacgattaccttgagag |
17682380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 5658415 - 5658334
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
258 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||||||||||||||||| |
|
|
| T |
5658415 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacaacgatgg |
5658334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 14677485 - 14677558
Alignment:
| Q |
178 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
251 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
14677485 |
aacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
14677558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 31100334 - 31100415
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
258 |
Q |
| |
|
||||| ||||||||||||||||| | ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
31100334 |
aaacacaattcaattcatagaaaagaaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
31100415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 11096 - 11176
Alignment:
| Q |
177 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatg |
257 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||| |||||||||||| |
|
|
| T |
11096 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatttgaacaacgatg |
11176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 35719 - 35639
Alignment:
| Q |
178 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
258 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||| ||| || |||||| | |||||||||||| |||||| |
|
|
| T |
35719 |
aacacaattcaattcatagaaagggaaaagctattaccttgagataaactttgcaaaattagcaaatctgaacagcgatgg |
35639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University