View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_low_11 (Length: 370)
Name: NF10951_low_11
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 6698087 - 6698442
Alignment:
| Q |
1 |
tgtgtaatcattagttaacaagaaaaattatcaaaaaagattaattatta----ttagttagtcaaacaccgcttaaaaatccaaacacgggttctctac |
96 |
Q |
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| T |
6698087 |
tgtgtaatcattagttaacaagaaaaattatcaaaaaagattaattattaattattagttagtcaaacaccgcttaaaaatccaaacacgggttctctac |
6698186 |
T |
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| Q |
97 |
ataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatctaaaaatactaattaaacattgatgaagatatgattcttca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698187 |
ataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatctaaaaatactaattaaacattgatgaagatatgattcttca |
6698286 |
T |
|
| Q |
197 |
acgatgttatgcccttagaagtgtctcttcaacatggtggataggtggagaaaatgtttcagcttttgcatttgcaccaacaccaacatgattacttgga |
296 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698287 |
acgatgttatgcccttagaagtgtctcttcaacatggcggataggtggagaaaatgtttcagcttttgcatttgcaccaacaccaacatgattacttgga |
6698386 |
T |
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| Q |
297 |
taacaagctttacaaagctcattatacctatttgcatcaaagttgtatgccttcat |
352 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6698387 |
taacaagctttgcaaagctcattatacctatttgcatcaaagttgtatgtcttcat |
6698442 |
T |
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