View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_low_13 (Length: 359)
Name: NF10951_low_13
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 37778423 - 37778746
Alignment:
| Q |
22 |
acacttcaatgttgttctacactttaattttcttctcttcatcttcaattctctctattttcttgagtactctcaaaacccaataacataacaaatatat |
121 |
Q |
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| T |
37778423 |
acacttcaatgttgttctacactttaattttcttctcttcatcttc-----tctctattttcttgagtactctcaaaacctaataacataacaaatatat |
37778517 |
T |
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| Q |
122 |
atcataaatatgaagaggataatttgcaattcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatca |
221 |
Q |
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| T |
37778518 |
atcataaatatgaagaggataatttgcaattcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatca |
37778617 |
T |
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| Q |
222 |
tgtacaagctcgtcataaacgatggaatgagtatgagggtggctaccgcttaccgcctcagttttgcagcggctttcactgttccccttgctgtttactt |
321 |
Q |
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| T |
37778618 |
tgtacaagctcgtcataaacgatggaatgagcatgagggtggccaccgcttaccgcctcagttttgcagcggctttcactgttccccttgctgtttactt |
37778717 |
T |
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| Q |
322 |
tgataggtccattttgcttcttttcttct |
350 |
Q |
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| T |
37778718 |
tgataggtccattttgcttcttttcttct |
37778746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 37806350 - 37806543
Alignment:
| Q |
148 |
caattcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatcatgtacaagctcgtcataaacgatgga |
247 |
Q |
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| T |
37806350 |
caattcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaagctcgttataaatgatggg |
37806449 |
T |
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| Q |
248 |
atgagtatgagggtggctaccgcttaccgcctcagttttgcagcggctttcactgttccccttgctgtttactttgataggtccattttgcttc |
341 |
Q |
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| T |
37806450 |
atgagtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcctcttgcttttatctttgataggttcattttgcttc |
37806543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 37796314 - 37796468
Alignment:
| Q |
152 |
tcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatcatgtacaagctcgtcataaacgatggaatga |
251 |
Q |
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| T |
37796314 |
tcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgctgctatgaatatcatgtgcaagctcgttataaatgatgggatga |
37796413 |
T |
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| Q |
252 |
gtatgagggtggctaccgcttaccgcctcagttttgcagcggctttcactgttcc |
306 |
Q |
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| T |
37796414 |
gtatgagggttgcgactgcttaccgcctcatttgtgcatcagctttcactattcc |
37796468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 329
Target Start/End: Original strand, 37785669 - 37785849
Alignment:
| Q |
149 |
aattcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatcatgtacaagctcgtcataaacgatggaa |
248 |
Q |
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| T |
37785669 |
aattcattggaaggagtaaaaccagtgatcctaatgttgtttgtgcagattgcaggtgcagctgtgaatatcatatgcaagcttgccataaatgatggga |
37785768 |
T |
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| Q |
249 |
tgagtatgagggtggctaccgcttaccgcctcagttttgcagcggctttcactgttccccttgctgtttactttgataggt |
329 |
Q |
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| T |
37785769 |
tgagcatgagggtggccactgcttaccgtctcacttttgcatcagctttcaccattcctcttgctcttatctttgataggt |
37785849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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