View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10951_low_2 (Length: 565)

Name: NF10951_low_2
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10951_low_2
NF10951_low_2
[»] chr3 (25 HSPs)
chr3 (164-527)||(30486974-30487338)
chr3 (251-411)||(30518260-30518420)
chr3 (1-87)||(30487415-30487501)
chr3 (409-506)||(30516954-30517051)
chr3 (420-507)||(30490930-30491017)
chr3 (420-507)||(30523455-30523542)
chr3 (421-516)||(30507809-30507904)
chr3 (26-87)||(30487725-30487786)
chr3 (309-380)||(30505092-30505163)
chr3 (25-84)||(30522256-30522315)
chr3 (26-84)||(30505399-30505457)
chr3 (26-71)||(30489577-30489622)
chr3 (164-232)||(30518438-30518505)
chr3 (291-397)||(30520060-30520167)
chr3 (31-71)||(30520396-30520436)
chr3 (288-368)||(30521956-30522041)
chr3 (26-77)||(30516171-30516221)
chr3 (27-77)||(30525275-30525325)
chr3 (26-87)||(30503531-30503592)
chr3 (291-380)||(30485599-30485691)
chr3 (288-410)||(30506515-30506642)
chr3 (31-76)||(30449840-30449885)
chr3 (27-76)||(30483453-30483502)
chr3 (316-380)||(30502661-30502726)
chr3 (27-84)||(30518584-30518641)
[»] chr5 (2 HSPs)
chr5 (25-84)||(38510691-38510750)
chr5 (25-84)||(38511475-38511534)
[»] chr6 (1 HSPs)
chr6 (37-87)||(10594354-10594404)
[»] chr2 (2 HSPs)
chr2 (26-76)||(29265464-29265514)
chr2 (309-357)||(29265212-29265261)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 164 - 527
Target Start/End: Complemental strand, 30487338 - 30486974
Alignment:
Q  164 taccaaacgcaaacacccttttgatgaaaagggtactgaggcggcaccttcaacttcagactttcgtagnnnnnnnnnnnnnnnnnn-ggattttgaaag 262  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||                   ||||||||||||    
T  30487338 taccaaacgcaaacccccttttgatgaaaagggtactgaggcggcaccttcaacttcagaatttcttagtttttttttttttttttttggattttgaaag 30487239  T
Q  263 aagttagagccaatttcaggcgagattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagcccttttctttctaca 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487238 aagttagagccaatttcaggcgagattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagcccttttctttctaca 30487139  T
Q  363 ttcagcaaaatagctgaagacaaagaacagtgaatataatccacgcttatatagaactcccacaatgaacacaagtttgcagctctcccttcagcttcat 462  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487138 ttcagcaaaatagctgaagacaaagaacagtgaatataacccacgcttatatagaactcccacaatgaacacaagtttgcagctctcccttcagcttcat 30487039  T
Q  463 cctccttttatcattttaattttttaacaaaacattgcaaaaccacatcctaatttctctccaat 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487038 cctccttttatcattttaattttttaacaaaacattgcaaaaccacatcctaatttctctccaat 30486974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 251 - 411
Target Start/End: Complemental strand, 30518420 - 30518260
Alignment:
Q  251 ggattttgaaagaagttagagccaatttcaggcgagattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagccct 350  Q
    |||||||||  |||||||||||| ||||||||||||||||| |||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  30518420 ggattttgatggaagttagagccgatttcaggcgagattctaattttccgcttgagttggtatttcccactagagcctctctcattgtaatcatagccct 30518321  T
Q  351 tttctttctacattcagcaaaatagctgaagacaaagaacagtgaatataatccacgctta 411  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||| |||| ||||    
T  30518320 tttctttctacattcagcaaaacagctgaaggcgaagaacagtgaatataacccacactta 30518260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 30487501 - 30487415
Alignment:
Q  1 taactaaataaactaatactcagaagaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgtagg 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  30487501 taactaaataaactaatactcagaagaaaatcagaaggttgaggggctcatatcaaggataaattatgaaagctctgccactgtagg 30487415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 409 - 506
Target Start/End: Complemental strand, 30517051 - 30516954
Alignment:
Q  409 ttatatagaactcccacaatgaacacaagtttgcagctctcccttcagcttcatcctccttttatcattttaattttttaacaaaacattgcaaaacc 506  Q
    |||||||| | |||||||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30517051 ttatatagtattcccacaatgaacaaaagtttacagctctcacttcagattcatcctccttttatcattttaattttttaacaaaacattgcaaaacc 30516954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 420 - 507
Target Start/End: Complemental strand, 30491017 - 30490930
Alignment:
Q  420 tcccacaatgaacacaagtttgcagctctcccttcagcttcatcctccttttatcattttaattttttaacaaaacattgcaaaacca 507  Q
    ||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30491017 tcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttacttttttaacaaaagattgcaaaacca 30490930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 420 - 507
Target Start/End: Complemental strand, 30523542 - 30523455
Alignment:
Q  420 tcccacaatgaacacaagtttgcagctctcccttcagcttcatcctccttttatcattttaattttttaacaaaacattgcaaaacca 507  Q
    ||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30523542 tcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttacttttttaacaaaagattgcaaaacca 30523455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 421 - 516
Target Start/End: Complemental strand, 30507904 - 30507809
Alignment:
Q  421 cccacaatgaacacaagtttgcagctctcccttcagcttcatcctccttttatcattttaattttttaacaaaacattgcaaaaccacatcctaat 516  Q
    |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| ||||| ||||||||||||  |||||||    
T  30507904 cccacaatcaacacaagtttgcagctctcgctccaccttcatcctccttttatcattttacttttttagcaaaagattgcaaaaccatttcctaat 30507809  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 30487786 - 30487725
Alignment:
Q  26 gaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgtagg 87  Q
    |||||| |||||||||||||||||||||||||| ||||||  |||||||||| |||||||||    
T  30487786 gaaaataagaaggttgaggggctcatatcaagtgtaaatttagaaagatctgtcactgtagg 30487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 30505163 - 30505092
Alignment:
Q  309 ggtatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaa 380  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| |||||||||| |||||||    
T  30505163 ggtatttcccactaaagacctctctcattgtaatcatcgccccttt-tttctactttcagcaaaacagctgaa 30505092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 30522315 - 30522256
Alignment:
Q  25 agaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgt 84  Q
    ||||||||||||| | |||||||||||||||||| |||||| ||||||||||| ||||||    
T  30522315 agaaaatcagaagatcgaggggctcatatcaagtgtaaattttgaaagatctgtcactgt 30522256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 30505457 - 30505399
Alignment:
Q  26 gaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgt 84  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||| |||| ||||||    
T  30505457 gaaaatcagaaagttgaggggctcatatcaagtgtaaattaagaaagctctgtcactgt 30505399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 30489622 - 30489577
Alignment:
Q  26 gaaaatcagaaggttgaggggctcatatcaagtataaattatgaaa 71  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||    
T  30489622 gaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaa 30489577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 30518505 - 30518438
Alignment:
Q  164 taccaaacgcaaacacccttttgatgaaaagggtactgaggcggcaccttcaacttcagactttcgtag 232  Q
    |||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| | ||||||| |||    
T  30518505 taccaaacccaaacccccttttgatgaaa-gggtaccgaggcggcaccttcaactcctgactttcttag 30518438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 30520167 - 30520060
Alignment:
Q  291 tgattttctgattgaattgg-tatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaagacaaaga 388  Q
    |||||||| |||| |||||| |||||||||||| || ||||||||||||||||||| ||||  || ||||||| |||||||||| |||||||  ||| ||    
T  30520167 tgattttccgattaaattgggtatttcccactacagacctctctcattgtaatcatcgccccatt-tttctaccttcagcaaaacagctgaaagcaatga 30520069  T
Q  389 acagtgaat 397  Q
    ||| |||||    
T  30520068 acaatgaat 30520060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 30520436 - 30520396
Alignment:
Q  31 tcagaaggttgaggggctcatatcaagtataaattatgaaa 71  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  30520436 tcagaaggttgaggggctcatatcaagtgtaaattatgaaa 30520396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 30522041 - 30521956
Alignment:
Q  288 ttctgattttctgattgaattgg----tatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagc 368  Q
    ||||||||||| |||||||||||    ||||||||||||||| ||||||||||| ||||||| |||| ||||||| ||| ||||||    
T  30522041 ttctgattttccgattgaattgggtattatttcccactaaaggcctctctcattataatcatggcccctttctttttaccttcagc 30521956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 30516221 - 30516171
Alignment:
Q  26 gaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctg 77  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  30516221 gaaaatcagaaggttgaggg-ctcatatcaagtgtaaattatgaaagctctg 30516171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 30525325 - 30525275
Alignment:
Q  27 aaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctg 77  Q
    |||||||||||||||||||||||||||||||| | |||| |||| ||||||    
T  30525325 aaaatcagaaggttgaggggctcatatcaagtgtgaattgtgaatgatctg 30525275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 30503592 - 30503531
Alignment:
Q  26 gaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgtagg 87  Q
    |||||| ||||||||||||||||||||| |||| |||||| ||| ||||||  |||||||||    
T  30503592 gaaaatgagaaggttgaggggctcatatgaagtgtaaattttgatagatctatcactgtagg 30503531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 380
Target Start/End: Complemental strand, 30485691 - 30485599
Alignment:
Q  291 tgattttctgattgaattgg-tatttcccactaaagcc---tctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaa 380  Q
    ||||||||||| | |||||| ||||||||||||||| |   ||||||||||||||||| ||||  || ||||||| |||||||||| |||||||    
T  30485691 tgattttctgaataaattgggtatttcccactaaagacctctctctcattgtaatcattgccccatt-tttctactttcagcaaaacagctgaa 30485599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 410
Target Start/End: Complemental strand, 30506642 - 30506515
Alignment:
Q  288 ttctgattttctgattgaattg----gtatttcccactaaa-gcctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaaga 382  Q
    ||||||||||| ||||||||||     |||||||||||||| ||||||||| || |||| ||  ||||||||||| ||| |||| ||||  |||||||      
T  30506642 ttctgattttccgattgaattgattattatttcccactaaaggcctctctcgttataataatctcccttttctttataccttcatcaaatcagctgaaag 30506543  T
Q  383 caaagaacagtgaatataatccacgctt 410  Q
    ||| ||||| ||||| ||| ||||||||    
T  30506542 caatgaacaatgaatctaacccacgctt 30506515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 30449885 - 30449840
Alignment:
Q  31 tcagaaggttgaggggctcatatcaagtataaattatgaaagatct 76  Q
    |||||| ||||||||||||||||||||| |||| | ||||||||||    
T  30449885 tcagaatgttgaggggctcatatcaagtgtaaaatttgaaagatct 30449840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 30483502 - 30483453
Alignment:
Q  27 aaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatct 76  Q
    ||||| ||||||||||||||||||||| |||| |||||| ||| ||||||    
T  30483502 aaaatgagaaggttgaggggctcatatgaagtgtaaattttgatagatct 30483453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 30502726 - 30502661
Alignment:
Q  316 cccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaa 380  Q
    |||||||||| |||||||| |||||||||| |||||||||||  ||| ||| |||||| |||||||    
T  30502726 cccactaaaggcctctctcgttgtaatcatcgcccttttcttaataccttcggcaaaacagctgaa 30502661  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 30518641 - 30518584
Alignment:
Q  27 aaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgt 84  Q
    |||| ||||||| ||||||  ||||||||||||||||||||||| | |||| ||||||    
T  30518641 aaaaccagaaggctgagggcttcatatcaagtataaattatgaaggctctgtcactgt 30518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 38510750 - 38510691
Alignment:
Q  25 agaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgt 84  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  38510750 agaaaatcagtaggttgaggggctcatatcaagtgtaaattttgaaagatctgtcactgt 38510691  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 38511534 - 38511475
Alignment:
Q  25 agaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatctgccactgt 84  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||    
T  38511534 agaaaatcagaaggttgaggggctcatatcaagtgtaaactttgaaagatctgtcactgt 38511475  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 10594404 - 10594354
Alignment:
Q  37 ggttgaggggctcatatcaagtataaattatgaaagatctgccactgtagg 87  Q
    |||||| ||||||||||||||| |||||| ||||||||||| |||||||||    
T  10594404 ggttgaagggctcatatcaagtgtaaattttgaaagatctgtcactgtagg 10594354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 29265514 - 29265464
Alignment:
Q  26 gaaaatcagaaggttgaggggctcatatcaagtataaattatgaaagatct 76  Q
    |||||| |||||||||||||||||||||||||| |||||| ||| ||||||    
T  29265514 gaaaatgagaaggttgaggggctcatatcaagtgtaaattttgatagatct 29265464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 29265261 - 29265212
Alignment:
Q  309 ggtatttcccactaaag-cctctctcattgtaatcatagcccttttcttt 357  Q
    ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  29265261 ggtatttcccactaaaggcctctctcattgtaatcatcgcccctttcttt 29265212  T

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