View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10951_low_23 (Length: 236)

Name: NF10951_low_23
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10951_low_23
NF10951_low_23
[»] chr3 (8 HSPs)
chr3 (90-221)||(30487592-30487723)
chr3 (130-224)||(30516404-30516497)
chr3 (130-211)||(30520617-30520697)
chr3 (147-221)||(30505646-30505719)
chr3 (130-221)||(30489801-30489891)
chr3 (147-221)||(30485861-30485934)
chr3 (159-214)||(31830049-31830104)
chr3 (150-210)||(30491920-30491979)
[»] chr6 (1 HSPs)
chr6 (153-210)||(10594636-10594693)
[»] chr4 (1 HSPs)
chr4 (172-221)||(17856397-17856446)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 30487592 - 30487723
Alignment:
Q  90 aagtttcagtgcctgcagaaaaagcatgaatatagctactacatgttttttagaaacaatatggtgggatttgttgtaataaggcagcagcccgacaacc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30487592 aagtttcagtgcctgcagaaaaagcatgaatatagctactacatgttttttagaaacaatatggtgggatttgttgtaatagggcagcagcccgacaacc 30487691  T
Q  190 gtggagatggaatccacagatgctgggttttt 221  Q
    ||||||||||||||||||||||||||||||||    
T  30487692 gtggagatggaatccacagatgctgggttttt 30487723  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 30516404 - 30516497
Alignment:
Q  130 acatgttttttagaaacaatatggtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagatgctgggtttttcct 224  Q
    |||||||||| |||||||||||||||| ||||||||||||  | |||| ||| ||||||||| ||||||||||||||||||| || |||||||||    
T  30516404 acatgtttttcagaaacaatatggtgg-atttgttgtaattggacagcggccagacaaccgtagagatggaatccacagatgttgagtttttcct 30516497  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 30520617 - 30520697
Alignment:
Q  130 acatgttttttagaaacaatatggtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagatg 211  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||  ||| ||||||||| |||||||||||||||||||    
T  30520617 acatgtttttcagaaacaatatggtgg-atttgttgtaattgggcagtggccagacaaccgtagagatggaatccacagatg 30520697  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 30505646 - 30505719
Alignment:
Q  147 aatatggtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagatgctgggttttt 221  Q
    |||||||||| ||||||||||||  |||||| || |||||||||||||||||||||||||||||| || ||||||    
T  30505646 aatatggtgg-atttgttgtaattcggcagcggctcgacaaccgtggagatggaatccacagatgttgagttttt 30505719  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 30489801 - 30489891
Alignment:
Q  130 acatgttttttagaaacaatatggtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagatgctgggttttt 221  Q
    ||||||||||  ||||||||||||||| ||||||||||||  ||||   ||| ||||||||| ||||||||||||||||||| || ||||||    
T  30489801 acatgtttttccgaaacaatatggtgg-atttgttgtaattgggcattggccagacaaccgtagagatggaatccacagatgttgagttttt 30489891  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 30485861 - 30485934
Alignment:
Q  147 aatatggtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagatgctgggttttt 221  Q
    |||||||||| ||||||||||||  |||||| ||| ||||||||| ||||||||||||||||||| || ||||||    
T  30485861 aatatggtgg-atttgttgtaattgggcagcggccagacaaccgtagagatggaatccacagatgttgagttttt 30485934  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 31830049 - 31830104
Alignment:
Q  159 tttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagatgctg 214  Q
    |||||| |||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  31830049 tttgttataattaggcagcggccagacaaccgtagagatggaatccacagatgctg 31830104  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 30491920 - 30491979
Alignment:
Q  150 atggtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagat 210  Q
    |||||||| |||||||||||  |||||| ||| ||||||||| ||||||||||||||||||    
T  30491920 atggtggg-tttgttgtaattgggcagcggccagacaaccgtagagatggaatccacagat 30491979  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 10594636 - 10594693
Alignment:
Q  153 gtgggatttgttgtaataaggcagcagcccgacaaccgtggagatggaatccacagat 210  Q
    |||| ||||||||||||  |||||| ||| ||||||||| ||||||||||||||||||    
T  10594636 gtggcatttgttgtaattgggcagcggccagacaaccgtagagatggaatccacagat 10594693  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 17856446 - 17856397
Alignment:
Q  172 ggcagcagcccgacaaccgtggagatggaatccacagatgctgggttttt 221  Q
    |||||| ||| ||||||||| |||||||||||||||||||||| ||||||    
T  17856446 ggcagcggccagacaaccgtagagatggaatccacagatgctgagttttt 17856397  T

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