View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_low_25 (Length: 226)
Name: NF10951_low_25
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 33865900 - 33866111
Alignment:
| Q |
1 |
tgagaaattcatcttccattttcggtccctcttctctctcactccagttacccttctaaaaaaccaagtgacgatatcacaagtgacgaatccggagaag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33865900 |
tgagaaattcatcttccattttcagtccctcttctctctcactccagttacccttctaaaaaatcaagtgacgatatcacaagtgacgaatccggagaag |
33865999 |
T |
|
| Q |
101 |
acaaagatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866000 |
acaaagatggagtagattacgtttttattgtgtacctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtca |
33866099 |
T |
|
| Q |
201 |
gctgttgtcgtt |
212 |
Q |
| |
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||| |||||||| |
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| T |
33866100 |
gcttttgtcgtt |
33866111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 23216794 - 23216581
Alignment:
| Q |
1 |
tgagaaattcatcttccattttcggtccctcttctctctc--actccagttacccttctaaaaaaccaagtgacgatatcacaagtgacgaatccggaga |
98 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23216794 |
tgagaaattcatcttccattttcagtccctcttctctctctcactccagttacccttctaaaaaaccaagtgacgatatcacaagtgacgaatccggaga |
23216695 |
T |
|
| Q |
99 |
agacaaagatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgt |
198 |
Q |
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| T |
23216694 |
agacaaagatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattcctatcccattgattaatttcgt |
23216595 |
T |
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| Q |
199 |
cagctgttgtcgtt |
212 |
Q |
| |
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| T |
23216594 |
cagcttatgtcgtt |
23216581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 30765814 - 30765754
Alignment:
| Q |
2 |
gagaaattcatcttccattttcggtccctcttctctctcactccagttacccttctaaaaaa |
63 |
Q |
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|||||| ||||||||||||| | ||||||||||||||||||||||||| |||| |||||||| |
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| T |
30765814 |
gagaaagtcatcttccattt-cagtccctcttctctctcactccagtttccctgctaaaaaa |
30765754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11075187 - 11075383
Alignment:
| Q |
1 |
tgagaaattcatcttccattttcggtccctcttctctctcactccagttacccttctaaaaaaccaagtgacgatatcacaagtgacgaatccggagaag |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
11075187 |
tgagaaattcatcttccattttcagtccctcttctctctcactccagttacccttctaaaaaaccaag---------------tgacgaatctggagaag |
11075271 |
T |
|
| Q |
101 |
acaaagatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtca |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
11075272 |
acaaagatggagaagattacgtttttattgtgtgcctcagcctttaaggttctgatttgcggttcttgctcaatttctatcccattgattaatttcgtca |
11075371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7135303 - 7135342
Alignment:
| Q |
1 |
tgagaaattcatcttccattttcggtccctcttctctctc |
40 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
7135303 |
tgagaaattcatcttccattttcagtccctcttctctctc |
7135342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17831248 - 17831287
Alignment:
| Q |
1 |
tgagaaattcatcttccattttcggtccctcttctctctc |
40 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
17831248 |
tgagaaattcatcttccattttcagtccctcttctctctc |
17831287 |
T |
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