View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10951_low_3 (Length: 562)
Name: NF10951_low_3
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 328 - 547
Target Start/End: Original strand, 156353 - 156572
Alignment:
| Q |
328 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgagcccttccaacactccccacaattctgccaaataag |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
156353 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgtgcccttccaacactccccacaattctgccaaataag |
156452 |
T |
|
| Q |
428 |
caccttctattccaatatacttcaatatacttggagaaacctcacaaccactcaccattgcttcctctaatgatgccaccacaaccaatatgaccaccat |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
156453 |
caccttctattccaatatacttcaatatacttggagaaacctcacaaccactcaccattgcttcctctaatgatgccaccacaaccaatatgaccaccat |
156552 |
T |
|
| Q |
528 |
ctctacaggatccatctgtg |
547 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
156553 |
ctctacaggatccatctgtg |
156572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 155863 - 155964
Alignment:
| Q |
19 |
gaactttcatcaaatcctatagcttcgtggaaacagtaaattatacaagagaccaatctagatctttaccgagaaagtaataggaatatatattcacatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155863 |
gaactttcatcaaatcctatagcttcgtggaaacagtaaattatacaagagaccaatctagatctttaccgagaaagtaataggaatatatattcacatc |
155962 |
T |
|
| Q |
119 |
at |
120 |
Q |
| |
|
|| |
|
|
| T |
155963 |
at |
155964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 156131 - 156217
Alignment:
| Q |
228 |
caataaaagactaatattgctaggacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagctaaaagcgtatg |
314 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
156131 |
caatagaagactaatattgctatgacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagctaaaagcgtatg |
156217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 156048 - 156089
Alignment:
| Q |
187 |
atatcgatgagggcctaagcccaaaaagaaagagattacaac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
156048 |
atatcgatgagggcctaagcccaaaaagaaagagattacaac |
156089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 31976581 - 31976695
Alignment:
| Q |
328 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgagcccttccaacactccccacaattctgccaaataag |
427 |
Q |
| |
|
||||||| |||| |||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
31976581 |
acaacaagtaagaagtcaacatgtaactcaataaatcgaaattacaaccttctgacatacatgagcccttccaacactccacataattctgccagataaa |
31976680 |
T |
|
| Q |
428 |
caccttctattccaa |
442 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
31976681 |
catctcctattccaa |
31976695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 37054066 - 37054140
Alignment:
| Q |
328 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggca-tacatgagcccttccaa |
401 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
37054066 |
acaataactaaggagtcaacatgcaactcaataaatcaaaattgcaaccttctaacattacatgaccccttccaa |
37054140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 31976373 - 31976445
Alignment:
| Q |
234 |
aagactaatattgctaggacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagctaaa |
306 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| || || ||||| || ||||||||||||| ||| ||||||||| |
|
|
| T |
31976373 |
aagactaatattactacgacatacatcaaaaaaacatatccctgactccatcgaacaattataattagctaaa |
31976445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 31976306 - 31976343
Alignment:
| Q |
191 |
cgatgagggcctaagcccaaaaagaaagagattacaac |
228 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
31976306 |
cgatgagagtctaagcccaaaaagaaagagattacaac |
31976343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 2909283 - 2909370
Alignment:
| Q |
336 |
taaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgagcccttccaacactccccacaattctgccaaa |
423 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
2909283 |
taaggagtcaacatgcaactcaataaaccaaaattgcaaccttctagcatacatgagatcttccaacactccccataattctaccaaa |
2909370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 2909069 - 2909135
Alignment:
| Q |
235 |
agactaatattgctaggacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagc |
302 |
Q |
| |
|
|||||||||||||||||| | |||||||| || |||| |||| |||||||||||||| |||||||||| |
|
|
| T |
2909069 |
agactaatattgctaggatagacatcaaaaaa-cagacccccaaatccatcgaacaaccatagttagc |
2909135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University