View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_low_6 (Length: 435)
Name: NF10951_low_6
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 37672226 - 37672422
Alignment:
| Q |
11 |
caaagggtgtatttcctggaaggtaagaatcaagatacaagatctaattatttactataaattagaatctacattgagcttctcatattcaaccaatcta |
110 |
Q |
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| T |
37672226 |
caaagggtgtatttcctggaaggtaagaatcaagatacaagatctaattatttactataaattagaatctacattgagcttctcatattcaaccaatcta |
37672325 |
T |
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| Q |
111 |
gaatggagagtgaagccaaacatgttattaagcagaagaagaacattgatgtcttagatatcctgggtgaaactctaaccatctatttcaaaaacat |
207 |
Q |
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| T |
37672326 |
gaatggagagtgaagccaaacatgttattaagcagaagaagaacattgatgtcttagatatcctgggtgaaactctaaccatctatttcaaaaacat |
37672422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 269 - 420
Target Start/End: Original strand, 37672484 - 37672635
Alignment:
| Q |
269 |
gaaacattgttccaacaaactcttgttcaaactccaaaaatcatcttacctttacctttccatgaaagaaatcaacttcgtttctattcagttattgata |
368 |
Q |
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| T |
37672484 |
gaaacattgttccaacaaactcttgttcaaactccaaaaatcatcttacctttacctttccatgaaagaaatcaacttcgtttctattcagttattgata |
37672583 |
T |
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| Q |
369 |
tttataatggcccaagttttagcaaagactatctacctcttttgattcaact |
420 |
Q |
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| T |
37672584 |
tttataatggcccaagttttagcaaagactatctacctcttttgattcaact |
37672635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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