View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10951_low_8 (Length: 393)
Name: NF10951_low_8
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 43748253 - 43747898
Alignment:
| Q |
17 |
atatttaactaggattgttagtttgttattaatgtttagaaataaaataacaatgaacaagtatatttagtttgagcttgaagaatcctaagttttttgc |
116 |
Q |
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| T |
43748253 |
atatttaactaggattgttagtttgttattaatgtttagaaataaaataacaatgaacaagtatatttagtttgagcttgaagaatcctaagttttttgc |
43748154 |
T |
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| Q |
117 |
aatcatgcatctggagcagtggagctacatccaatacatttcaagtttcaattgcatattttgattttttgccaagagttgaaatattagcagtcttatc |
216 |
Q |
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| T |
43748153 |
aatcatgcatctggagc--------tacatccaatacatttcaagtttcaattgcatattttgattttttgccaagagttgaaatattagcagtcttatc |
43748062 |
T |
|
| Q |
217 |
ttgatcggacggcctgagatgcatggttgcgctagaattcctaaccaagataaattcatattagaagtatacacattgaactaccttgtctattttcaaa |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43748061 |
ttgatcggacggcctgagatgcttggttgcgctagaattcctaaccaagataaattcatattagaagtatacacattgaactaccttgtctattttcaaa |
43747962 |
T |
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| Q |
317 |
gcctcaagatatgcagcatcttgttcttctctgagtttacgatctgctcggatcttttcatctc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43747961 |
gcctcaagatatgcagcatcttgttcttctctgagtttacgatctgctcggatcttttcatctc |
43747898 |
T |
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