View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10951_low_9 (Length: 386)
Name: NF10951_low_9
Description: NF10951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10951_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 11197683 - 11197984
Alignment:
| Q |
1 |
aaaaacttaaacgattttggtctatgttgatccccttctaactccgtattactaattaatgattaatgtccatttggtttaagatttacaattaaataaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11197683 |
aaaaacttgaacgattttggtctatgttgatccccttctaactccgtattactaattaatgattaaggtccatttggtttaagatttacaattaaataaa |
11197782 |
T |
|
| Q |
101 |
aatatccaaatagttacaaactatgaagatgaaagagacatcttacgaaaatgaaagagacattatagttttagagaagactaaaatgtgaaattaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197783 |
aatatccaaatagttacaaactatgaagatgaaagagacatcttacgaaaatgaaagagacattatagttttagagaagactaaaatgtgaaattaagga |
11197882 |
T |
|
| Q |
201 |
gtatattttaatcaaaagtctcacgtttgnnnnnnnggctcaaaaagacagttaagacacacttaatggaaatcactcgatgccaagatcactcatctac |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197883 |
gtatattttaatcaaaagtctcacctttgtttttttggctcaaaaagacggttaagacacacttaatggaaatcactcgatgccaagatcactcatctac |
11197982 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
11197983 |
tt |
11197984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 11182110 - 11182027
Alignment:
| Q |
104 |
atccaaatagttacaaactatgaagatgaaagagacatc--ttacgaaaatgaaagagacattatagttttagagaagactaaa |
185 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | | | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11182110 |
atccaaatagttacaaactatatagatgaaagagacatccctaaaaagaatgaaagacacattatagttttagagaagactaaa |
11182027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University