View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10952_high_10 (Length: 237)
Name: NF10952_high_10
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6965863 - 6965643
Alignment:
| Q |
1 |
ccaaaaccaacaggtatggcctgcctatatctgcaatctcctgatgttgtcattccctgattgaatcaaatgttatataacatatcaatcatgaacacaa |
100 |
Q |
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| T |
6965863 |
ccaaaaccaacaggtatggcctgcctatatctgcaatctcctgctgttgtcattccctgattgaatcaaatgttatataacatatcaatcatgaacacaa |
6965764 |
T |
|
| Q |
101 |
acataacttattttaaacacatttttgcattctgcataatcaaaactataatacaagtcaagtttggggtatggcagattgctgagttaactacaatact |
200 |
Q |
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| T |
6965763 |
acataactt-ttttaaacacatttttgcattctgcataatcaaaactataatacaagtcaagtttggggtatggcagattgctgagttaactacaatact |
6965665 |
T |
|
| Q |
201 |
aatgcattctcgatgtactact |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
6965664 |
aatgcattctcgatgtactact |
6965643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6955521 - 6955414
Alignment:
| Q |
1 |
ccaaaaccaacaggtatggcctgcctatatctgcaatctcctgatgttgtcattccctgattgaatcaaatgttatataacatatcaatcatgaacacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||| | || | ||||||||| | ||||||| |
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| T |
6955521 |
ccaaaaccaacaggtatggcctgcctgtatctgcaatatcctgctgttgtcattccctgattcaatcaaatttcattcataatatcaatcttaaacacaa |
6955422 |
T |
|
| Q |
101 |
acataact |
108 |
Q |
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|||||||| |
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| T |
6955421 |
acataact |
6955414 |
T |
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