View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10952_low_1 (Length: 575)

Name: NF10952_low_1
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10952_low_1
NF10952_low_1
[»] chr1 (6 HSPs)
chr1 (267-529)||(8295824-8296086)
chr1 (17-274)||(8296108-8296360)
chr1 (267-529)||(18280623-18280884)
chr1 (24-187)||(18280379-18280539)
chr1 (131-211)||(51672451-51672531)
chr1 (154-216)||(33749127-33749189)
[»] chr7 (8 HSPs)
chr7 (59-216)||(38602994-38603153)
chr7 (130-213)||(19267362-19267445)
chr7 (137-209)||(7754213-7754285)
chr7 (59-187)||(30969768-30969898)
chr7 (59-216)||(37757437-37757596)
chr7 (59-216)||(37763185-37763344)
chr7 (59-90)||(25584008-25584039)
chr7 (165-216)||(25913764-25913813)
[»] chr5 (1 HSPs)
chr5 (59-211)||(18345690-18345844)
[»] chr6 (5 HSPs)
chr6 (111-211)||(14536110-14536210)
chr6 (127-211)||(28754727-28754811)
chr6 (132-187)||(5736395-5736450)
chr6 (130-211)||(14518612-14518693)
chr6 (155-187)||(25164297-25164329)
[»] chr2 (2 HSPs)
chr2 (128-217)||(3143232-3143321)
chr2 (126-166)||(35466562-35466602)
[»] chr4 (1 HSPs)
chr4 (132-215)||(23499433-23499516)
[»] chr8 (3 HSPs)
chr8 (37-187)||(39421529-39421676)
chr8 (160-215)||(7840408-7840462)
chr8 (171-211)||(35229421-35229461)
[»] chr3 (2 HSPs)
chr3 (133-211)||(41417138-41417216)
chr3 (137-178)||(8005058-8005099)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 267 - 529
Target Start/End: Complemental strand, 8296086 - 8295824
Alignment:
Q  267 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8296086 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 8295987  T
Q  367 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtgctctggtattgtctttgggcttctgttcggataatgtctg 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8295986 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtggtctggtattgtctttgggcttctgttcggataatgtctg 8295887  T
Q  467 tagcagggttctttagcaatggaatttctgtttctgaatttttctgttatgcagaatgactgg 529  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8295886 tagcagggttctttagcaatgcaatttctgtttctgaatttttctgttatgcagaatgactgg 8295824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 8296360 - 8296108
Alignment:
Q  17 gtatgtctagtatacattgcatctggctcctctaaagtgagttgagcaactcactttagagtgtaaagtgagtattaaaccatcaatgaacaatttaaag 116  Q
    ||||||||||||||||||| |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8296360 gtatgtctagtatacattggatctggctcctctaaagtgag-----caactcactttagagtgtaaagtgagtattaaaccgtcaatgaacaatttaaag 8296266  T
Q  117 gtaagtatagtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 216  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  8296265 gtaagtattgtaagtacataataacaaatcatgaatgagttacaataacaacccttgattttctcactttataattaactcactttagaggatccaaatt 8296166  T
Q  217 tgtatgtatatatacaattttaagttgttgaaactttaaactgaagaaaacactttat 274  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  8296165 tgtatgtatatatacaattttaagttgttgaaactttaaaccgaagaaaacaatttat 8296108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 267 - 529
Target Start/End: Original strand, 18280623 - 18280884
Alignment:
Q  267 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 366  Q
    |||||||| ||||| || |||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  18280623 cactttataacatacttcaaatgaattactatgactataatactaagtcctatccaatcatgtttatgttttcttcttctgggttatgagaagaattagt 18280722  T
Q  367 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtgctctggtattgtctttgggcttctgttcggataatgtctg 466  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||  ||   |    
T  18280723 ttggcctcttgtaggtgtatggtgtcttgaggcatgttgttttacttgga-gggttggtggtctggtattgtctttgggcttctgttcggatgttgatag 18280821  T
Q  467 tagcagggttctttagcaatggaatttctgtttctgaatttttctgttatgcagaatgactgg 529  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  18280822 tagcagggttctttagcaatgtaatttctgtttctgaatttttctggtatgcagaatgactgg 18280884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 18280379 - 18280539
Alignment:
Q  24 tagtatacattgcatctggctcctctaaagtgagttgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaag 121  Q
    |||||||||| |  ||||||||||||||||||||     |||||||||||||||||||||||||||| ||  |||| ||||||||||| ||||||||||     
T  18280379 tagtatacataggttctggctcctctaaagtgag-----caactcactttagagtgtaaagtgagtaatataaaccgtcaatgaacaaattaaaggtaaa 18280473  T
Q  122 tatagtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 187  Q
    ||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||||| |||||||    
T  18280474 tattgtaagtacatcataacaaatcataaatatgttacaataacaacccttgattttctcacttta 18280539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 51672531 - 51672451
Alignment:
Q  131 tacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 211  Q
    |||||||||||||||||||| |  | ||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||    
T  51672531 tacatcataacaaatcatgagtttgatacaataacaacctttgattttctcacgttacacttaactcactttagaggatcc 51672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 33749127 - 33749189
Alignment:
Q  154 agttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 216  Q
    ||||| ||||||||||||||| ||||  |||||||| || | |||||||||||||||||||||    
T  33749127 agttaaaataacaacccttgagtttctgactttatactttagtcactttagaggatccaaatc 33749189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 38603153 - 38602994
Alignment:
Q  59 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 156  Q
    ||||||||||||||||||||||||||||| || ||  |||| | ||| || || | |||||||  ||| ||| |||||| |||||||||||||| |  ||    
T  38603153 tgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacattataacaaatcatgagtttgt 38603054  T
Q  157 tacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 216  Q
    || ||||||||||||||||||||   ||||| | || |||||||||||||||||||||||    
T  38603053 taaaataacaacccttgattttcttgctttacacttcactcactttagaggatccaaatc 38602994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 19267362 - 19267445
Alignment:
Q  130 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaa 213  Q
    ||||||||||||||||||||| |  |||| |||||||||||||||||||| || |||| | || ||||||||||||||||||||    
T  19267362 gtacatcataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggatccaa 19267445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 7754213 - 7754285
Alignment:
Q  137 ataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggat 209  Q
    |||| |||||| || || ||||||||||||||||||||||||| || |||| | |||||||||||||||||||    
T  7754213 ataataaatcacgagtgtgttacaataacaacccttgattttctcattttacacttaactcactttagaggat 7754285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 30969898 - 30969768
Alignment:
Q  59 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 156  Q
    ||||||||| |||||||||||||||||| | | ||  |||| | ||| ||||| |||| |||   | | ||| ||| ||||||||||||||||| |  ||    
T  30969898 tgagcaactaactttagagtgtaaagtgcgcaatatcaaccgttaattaacaaattaagggttgattttgtaggtatatcataacaaatcatgagtttgt 30969799  T
Q  157 tacaataacaacccttgattttcccacttta 187  Q
    ||||||||||||||||||||||| |||||||    
T  30969798 tacaataacaacccttgattttctcacttta 30969768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 37757437 - 37757596
Alignment:
Q  59 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 156  Q
    ||||||||||||||||||||||||||||| || ||  || | | ||| || || | |||||||  ||| ||| |||||| ||||||| |||||| |  ||    
T  37757437 tgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgt 37757536  T
Q  157 tacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 216  Q
    || |||||||||| ||||||||| | ||||| | || ||| |||||||| |||| |||||    
T  37757537 taaaataacaacctttgattttctcgctttacacttcactaactttagatgatctaaatc 37757596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 37763185 - 37763344
Alignment:
Q  59 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 156  Q
    ||||||||||||||||||||||||||||| || ||  || | | ||| || || | |||||||  ||| ||| |||||| ||||||| |||||| |  ||    
T  37763185 tgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgt 37763284  T
Q  157 tacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 216  Q
    || |||||||||| ||||||||| | ||||| | || ||| |||||||| |||| |||||    
T  37763285 taaaataacaacctttgattttctcgctttacacttcactaactttagatgatctaaatc 37763344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 25584008 - 25584039
Alignment:
Q  59 tgagcaactcactttagagtgtaaagtgagta 90  Q
    ||||||||||||||||||||||||||||||||    
T  25584008 tgagcaactcactttagagtgtaaagtgagta 25584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 25913813 - 25913764
Alignment:
Q  165 caacccttgattttcccactttataattaactcactttagaggatccaaatc 216  Q
    ||||| ||||||||| |||||||  ||| |||||||||||||||||||||||    
T  25913813 caaccgttgattttctcacttta--atttactcactttagaggatccaaatc 25913764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 18345844 - 18345690
Alignment:
Q  59 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 156  Q
    ||||||| |||||||||||||||||||| | | ||  |||| | ||| || || | ||| |||  ||| ||| |||| |||||||||||||||| |  ||    
T  18345844 tgagcaattcactttagagtgtaaagtgggcaatatcaaccgttaattaataaatgaaaagtatatattgtaggtacgtcataacaaatcatgagtttgt 18345745  T
Q  157 tacaataacaacccttgattttcccactttataattaactcactttagaggatcc 211  Q
    | |||||||||||||||||||||  |||||||| || |||||||||||| |||||    
T  18345744 tgcaataacaacccttgattttcgtactttatactttactcactttagacgatcc 18345690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 14536210 - 14536110
Alignment:
Q  111 ttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatc 210  Q
    |||||||||  ||| ||| |||||||||||||||||| || |  ||| ||||||||||| ||||||||| ||||||| | || |||| ||||||||||||    
T  14536210 ttaaaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctcactttacacttcactcgctttagaggatc 14536111  T
Q  211 c 211  Q
    |    
T  14536110 c 14536110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 28754811 - 28754727
Alignment:
Q  127 taagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 211  Q
    ||||||||| |||||||||||||  || |||||||||||| || ||||||||  |  |||||| || ||||| ||||||||||||    
T  28754811 taagtacattataacaaatcatgggtgtgttacaataacatcctttgattttatcggtttatattttactcaatttagaggatcc 28754727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 5736450 - 5736395
Alignment:
Q  132 acatcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 187  Q
    ||||||||||||||||| |||   |||||||||||||| ||||||||| |||||||    
T  5736450 acatcataacaaatcattaatttcttacaataacaaccattgattttctcacttta 5736395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 14518693 - 14518612
Alignment:
Q  130 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 211  Q
    ||||||||||||||||||||| |   ||| ||||||||  |||||||||| ||||||| | || | ||||||||||| ||||    
T  14518693 gtacatcataacaaatcatgagtttcttataataacaattcttgattttctcactttacactttattcactttagagaatcc 14518612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 25164329 - 25164297
Alignment:
Q  155 gttacaataacaacccttgattttcccacttta 187  Q
    |||||||||||||||||| ||||||||||||||    
T  25164329 gttacaataacaacccttaattttcccacttta 25164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 3143232 - 3143321
Alignment:
Q  128 aagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatct 217  Q
    ||||| |||||||||||||| || |  |||| ||||||||| |||||| ||| ||||||| || | | ||||||||||||||||||||||    
T  3143232 aagtatatcataacaaatcaggagtttgttaaaataacaacacttgatattctcactttacaaattagtcactttagaggatccaaatct 3143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 35466602 - 35466562
Alignment:
Q  126 gtaagtacatcataacaaatcatgaatgagttacaataaca 166  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  35466602 gtaagtacatcataacaaatcatgaatttgttataataaca 35466562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 23499433 - 23499516
Alignment:
Q  132 acatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaat 215  Q
    ||||||||||||||||||| |  |||| ||||||||||||| |||||| ||||||| | || |  ||||||| |||||||||||    
T  23499433 acatcataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacacttcagccactttaaaggatccaaat 23499516  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 39421676 - 39421529
Alignment:
Q  37 atctggctcctctaaagtgagttgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtaca 134  Q
    |||||||||||||||||||||     |||  ||||||| ||| ||||||||||| ||  ||||||  || ||||| | |||||||  |||   |||||||    
T  39421676 atctggctcctctaaagtgag-----caatccactttaaagtataaagtgagtaatatcaaccattgattaacaaatcaaaggtagatattagaagtaca 39421582  T
Q  135 tcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 187  Q
     ||||||||||||||| |  |||| |||||||||| ||||||||| |||||||    
T  39421581 ccataacaaatcatgagtttgttaaaataacaacctttgattttctcacttta 39421529  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 7840408 - 7840462
Alignment:
Q  160 aataacaacccttgattttcccactttataattaactcactttagaggatccaaat 215  Q
    ||||||||||||||||||||  |||||| | |||||||||||||||||| ||||||    
T  7840408 aataacaacccttgattttct-actttacacttaactcactttagaggagccaaat 7840462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 35229461 - 35229421
Alignment:
Q  171 ttgattttcccactttataattaactcactttagaggatcc 211  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  35229461 ttgattttctcactttatactttactcactttagaggatcc 35229421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 41417216 - 41417138
Alignment:
Q  133 catcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 211  Q
    ||||||| ||||||| || |  |||||||||||||||||||||||||  |||||| | ||  ||| |||||||||||||    
T  41417216 catcatagcaaatcacgagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggatcc 41417138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 8005058 - 8005099
Alignment:
Q  137 ataacaaatcatgaatgagttacaataacaacccttgatttt 178  Q
    ||||||||||||||||  |||||||||||||||||| |||||    
T  8005058 ataacaaatcatgaatttgttacaataacaacccttaatttt 8005099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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