View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10952_low_10 (Length: 241)
Name: NF10952_low_10
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 27228640 - 27228431
Alignment:
| Q |
14 |
gagaaagctggcagagaattgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacg |
113 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27228640 |
gagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgaagacg |
27228541 |
T |
|
| Q |
114 |
gtttatcagatgatgatcccattagaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatca |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228540 |
gtttatcagatgatgatcccattagagcaagccttactacctacttaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatca |
27228441 |
T |
|
| Q |
214 |
tgctgctgat |
223 |
Q |
| |
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|||||||||| |
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| T |
27228440 |
tgctgctgat |
27228431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 27224439 - 27224240
Alignment:
| Q |
12 |
cagagaaagctggcagagaattgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacga |
111 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||| |||| |||||||||| || |
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| T |
27224439 |
cagagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgatga |
27224340 |
T |
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| Q |
112 |
cggtttatcagatgatgatcccattagaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaat |
211 |
Q |
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| T |
27224339 |
cggtttatcagatgatgatcccattagaacaagtcaaactacctacttaccacacctcgagcttgttgggaaacagtttctttctcaaatgatcaagaat |
27224240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 19665222 - 19665424
Alignment:
| Q |
12 |
cagagaaagctggcagagaattgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacga |
111 |
Q |
| |
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||||||||||||||| ||| || ||||||||||||||||| | | |||||| ||| |||| | ||| ||||||||||| ||| | |||||||| || |
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| T |
19665222 |
cagagaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatga |
19665321 |
T |
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| Q |
112 |
cggtttatcagatgatgatcccattagaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaat |
211 |
Q |
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|||||| ||||||||||||||||||| |||| ||| | |||||| |||| || ||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
19665322 |
tggtttagaagatgatgatcccattagagcaagtcttggtggatactcaacacagcttgagcttgttgggacaaagtttctttctcaaatgattaagaat |
19665421 |
T |
|
| Q |
212 |
cat |
214 |
Q |
| |
|
||| |
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| T |
19665422 |
cat |
19665424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 48653566 - 48653462
Alignment:
| Q |
35 |
agaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgatgatccca |
134 |
Q |
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||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||| ||| | || ||||||||||| || ||||| |||||||||||| | |
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| T |
48653566 |
agaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgtttagaagatgatgatccta |
48653467 |
T |
|
| Q |
135 |
ttaga |
139 |
Q |
| |
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||||| |
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|
| T |
48653466 |
ttaga |
48653462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 11547671 - 11547574
Alignment:
| Q |
41 |
gttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgatgatcccattag |
138 |
Q |
| |
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|||||||||||| |||| |||||||||| || | ||||||||||||||| | || ||||||||||| || |||||| |||||||||||| ||||| |
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| T |
11547671 |
gttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgatgatggtttacaagatgatgatcctattag |
11547574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 48617866 - 48617986
Alignment:
| Q |
12 |
cagagaaagctggcagagaattgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacga |
111 |
Q |
| |
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||||||||||||||| ||| | |||||||||||||| |||||||| |||||| ||| | || ||||| |||||||||| | || |||||||| || || |
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| T |
48617866 |
cagagaaagctggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagttcttagatga |
48617965 |
T |
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| Q |
112 |
cggtttatcagatgatgatcc |
132 |
Q |
| |
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|||||| ||||||| |||| |
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| T |
48617966 |
tggtttagaagatgatcatcc |
48617986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 48640338 - 48640256
Alignment:
| Q |
43 |
taacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatg |
125 |
Q |
| |
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||||||||||||||| |||| || | |||| ||||| ||||| || |||| ||||||||||||||||| |||||| |||||| |
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| T |
48640338 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacgatggtttaccagatg |
48640256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 48661856 - 48661815
Alignment:
| Q |
177 |
ttgggaaaaagtttctttctcaaatgatcaagaatcatgctg |
218 |
Q |
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|||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
48661856 |
ttgggagacagtttgtttctcaaatgatcaagaatcatgctg |
48661815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 48585765 - 48585685
Alignment:
| Q |
43 |
taacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcaga |
123 |
Q |
| |
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||||||||||||||| |||| || | |||| ||||| ||||| || |||| |||||||||||||| || |||||| |||| |
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| T |
48585765 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggtttaccaga |
48585685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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