View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10952_low_11 (Length: 240)
Name: NF10952_low_11
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23202950 - 23203189
Alignment:
| Q |
1 |
ttttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagctaggatgtcaagcttattatc |
100 |
Q |
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| T |
23202950 |
ttttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagttaggatgtcaagctcatcatc |
23203049 |
T |
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| Q |
101 |
taatgcccatgcactcaaatttttgcaaagttgagcatgacttccatggaggaagaatgcaataaacttattatagaatccttaaacaaatgtcacctgg |
200 |
Q |
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| T |
23203050 |
taatgcccatgcactctaatttttgcaaagttgaacatgacttccatggaggatgaatgcaatatacttatcatagaattcttaaacaaatgtcacttgg |
23203149 |
T |
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| Q |
201 |
cttatcaaatgtcacatggggctcaacacattatagtgct |
240 |
Q |
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| T |
23203150 |
cttatcaaatgtcaactggggctcaacacattacagtgct |
23203189 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 32255022 - 32255187
Alignment:
| Q |
3 |
ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagctaggatgtcaagcttattatcta |
102 |
Q |
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| T |
32255022 |
ttgtatttctttatgt--caataaatttgttagggtgttgcaaatgataggtagtgaattttgggtgtcaacttaattaggatgtcaactttttcttctg |
32255119 |
T |
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| Q |
103 |
atgcccatgcactcaaatttttgcaaagttgagcatgacttccatggaggaagaatgcaataaactta |
170 |
Q |
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| T |
32255120 |
atgtccatgcactctaatatttgcaaagttgaacatgattcccatggaggaggaatgcaatagactta |
32255187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 32248852 - 32248935
Alignment:
| Q |
99 |
tctaatgcccatgcactcaaatttttgcaaagttgagcatgacttccat--ggaggaagaatgcaataaacttattatagaatc |
180 |
Q |
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| T |
32248852 |
tctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaatc |
32248935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 29084440 - 29084400
Alignment:
| Q |
126 |
caaagttgagcatgacttccatggaggaagaatgcaataaa |
166 |
Q |
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| T |
29084440 |
caaagttgaacatgactgccatggaggaagagtgcaataaa |
29084400 |
T |
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