View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10952_low_14 (Length: 233)
Name: NF10952_low_14
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7981272 - 7981061
Alignment:
| Q |
1 |
acgtttctcattttaaa-tatttacgtgctataatatagatagatattttagttttaacatatcactgttttgactatttcaaatgagaaatattnnnnn |
99 |
Q |
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| T |
7981272 |
acgtttctcattttaaaatatttacgtgctattatatagata----ttttagttttaatatattactgttttgactatttcaaatgagaaatattaaaaa |
7981177 |
T |
|
| Q |
100 |
nncataggtcatgcatcatcatataggccaggtcataccttttacttttctttaaacagaaaattcaacctatcagtatgtcatgtaggccatgcatttt |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7981176 |
agcataggccatgcatcatcatataggccaggtcataccttttacttttctttaaacagaaaattcaacctatcagtatgtcatgtaggccatgcatttt |
7981077 |
T |
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| Q |
200 |
ttcttcgtacacttgc |
215 |
Q |
| |
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|||||||||||||||| |
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| T |
7981076 |
ttcttcgtacacttgc |
7981061 |
T |
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