View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10952_low_4 (Length: 350)
Name: NF10952_low_4
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 42699764 - 42699442
Alignment:
| Q |
18 |
ggattcacggtggagattcgaagatggctctttgcgaactgaggatcggatattcgggttttccattccatgatttgcaaacacatttaaattgaaggag |
117 |
Q |
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| T |
42699764 |
ggattcgcggtggagattcgaagatggctctttgcgaactgaggatcggatattcgggttttccattccatgatttgcaaacacatttaaattgaaggag |
42699665 |
T |
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| Q |
118 |
ggatctcacaggaagtcttgcaaggatctcgtcgatgagttctttcggcaattctggcaatagcaatatattctcggcattagtttcaggaactggtaga |
217 |
Q |
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| T |
42699664 |
ggatctcacaggaagtcttgcaagaatctcgtcgatgagttctttcggcaattctggcaatagcaatatattctcggcattagtttcaggaaccggtaga |
42699565 |
T |
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| Q |
218 |
gttgaaacagtgtcgttctgagagtggtagagagtgagcttgcgtttcacgatcttaaagtcatcacccatctttgttacagctgctgtttcttattttg |
317 |
Q |
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| T |
42699564 |
gttgaaacagtatcgttctgagagtggtagagagtgagcttgcgtttcacgatcttaaagtcatcacccatctttgtcacagctgctgtttcttattttg |
42699465 |
T |
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| Q |
318 |
cagcagaactggaaaaccctttg |
340 |
Q |
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| T |
42699464 |
cagcagaactggaaaaccctttg |
42699442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 24042495 - 24042547
Alignment:
| Q |
83 |
ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaagtct |
135 |
Q |
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| T |
24042495 |
ttccaagatttacagacgcatttaaattgaaggagggatctcaccggaagtct |
24042547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 42693693 - 42693641
Alignment:
| Q |
83 |
ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaagtct |
135 |
Q |
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| T |
42693693 |
ttccatgatttgcagacacatttgaattgaaggagagatcgcactggaagtct |
42693641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 24001636 - 24001584
Alignment:
| Q |
83 |
ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaagtct |
135 |
Q |
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| T |
24001636 |
ttccaagatttacacacgcatttaaattgaaggagggatctcacaggaagtct |
24001584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 43986921 - 43987005
Alignment:
| Q |
83 |
ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaagtcttgcaaggatctcgtcgatgagttctttcggca |
167 |
Q |
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| T |
43986921 |
ttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtctcaaaaggatctcaatgatgagttctttcggca |
43987005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 23681724 - 23681634
Alignment:
| Q |
37 |
gaagatggctctttgcgaactgaggatcggatattcgggttttccattccatgatttgcaaacacatttaaattgaaggagggatctcacaggaag |
132 |
Q |
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| T |
23681724 |
gaagatggctctttgcgaattgaggattggaaattagggtttt-----ccatgatttggaaacgcactttaattggagaagggatctcacaggaag |
23681634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 43907712 - 43907627
Alignment:
| Q |
83 |
ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaagtcttgcaaggatctcgtcgatgagttctttcggcaa |
168 |
Q |
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| T |
43907712 |
ttccatgatttgcaaacacacttgtattggacaagggatttcaccggaagcctcaaaaggatctcgacgatgagttcttccggcaa |
43907627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 44005495 - 44005544
Alignment:
| Q |
83 |
ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaag |
132 |
Q |
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| T |
44005495 |
ttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag |
44005544 |
T |
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