View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10952_low_5 (Length: 340)
Name: NF10952_low_5
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_low_5 |
 | |
|
| [»] scaffold0097 (2 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 2635899 - 2636215
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2635899 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgcgagtttgatatcaccttaagttgg |
2635998 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatcaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2635999 |
gattcatctgcaacatatatatggttagtttttgtctgtgttatttatgtattatgcctaatctgattcttggtgacttgttagatcattgttaatcaat |
2636098 |
T |
|
| Q |
208 |
ggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaataa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2636099 |
ggttgatggaatctataggttgaacattgctttttattttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaatag |
2636198 |
T |
|
| Q |
308 |
ttcgcaatcatcaattg |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2636199 |
ttcgcaatcatcaattg |
2636215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 7324304 - 7324007
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7324304 |
attccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttgatatcaccttaagctgg |
7324205 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatc-aa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||||| ||||||| ||| ||||||||| |||||||||||||| || |
|
|
| T |
7324204 |
gattcaactgcaacatatatatggttagtttttgtttgtgttgtt--tgttttacgcctgctctgatttttgttgacttgttggatcattgttaatctaa |
7324107 |
T |
|
| Q |
207 |
tggttgatggaatctata-ggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaat |
305 |
Q |
| |
|
|||||||||||||||||| ||||||| | || |||| |||||| |||||| |||||||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
7324106 |
tggttgatggaatctatagggttgaa-aatgacttttattttcatcagtttgattaatttgagttgttgattctctcacatattgcattatattttaaat |
7324008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 2644229 - 2643922
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||||| ||| || || |||||||| |||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2644229 |
attccaaaactggcacattgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtctacattgagagtttgatatcaccttaagctgg |
2644130 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatc-aa |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||| ||||||| | ||||||||||||||| |||||| | |
|
|
| T |
2644129 |
gattcaactgcaacatatatatggttagtttttgtctgtgttatttatatgttatgcctgctctaattcttgattacttgttagatcattattaatctac |
2644030 |
T |
|
| Q |
207 |
tggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaata |
306 |
Q |
| |
|
| || ||||| |||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2644029 |
tagt----------tatagcttgatcattgctttttattttcaatagtttggttaatttgagttgttgattctctcacatcttgcactatattttaaata |
2643940 |
T |
|
| Q |
307 |
attcgcaatcatcaattg |
324 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
2643939 |
gttcgcaatcattaattg |
2643922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 2476812 - 2477104
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2476812 |
attccaaaactggtacttcgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtctacattgagagtttgatatcaccttaagctgg |
2476911 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagttt--ttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatca |
205 |
Q |
| |
|
|||||| || ||||||||||||||||||||| || |||||||||||| | ||||||||| | ||| ||||||| | ||||| ||||||||||||||| |
|
|
| T |
2476912 |
gattcaactccaacatatatatggttagttttctttgttgtgttattta--ttttatgcctgctttgagtcttggttatttgttggatcattgttaatca |
2477009 |
T |
|
| Q |
206 |
atggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatatttt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2477010 |
atggttgatggaatctataggttgaacattgc-ttttattttcaatagtttggttagtttgagttgttgattctctcacattttgcactatctttt |
2477104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 2631535 - 2631834
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||||| ||||| ||| ||||||| ||||||||||||||||||||||| |||| || ||| ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
2631535 |
attccaaaactggtatttttaatattcttgagtttcaaaacaactatgaacatatatcccaaaaagtctacattgagagtttaatatcaccttaagctgg |
2631634 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttt-tgtttgtgttatttatgta---ttatgcctgatctgattcttggtgacttgttagatcattgttaat |
203 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||| |||||||||| | ||||| ||| | |||||||| |||||||||| ||||||||||||| |
|
|
| T |
2631635 |
gattcaactgcaacatatacatggttagttttatgtttatgttatttattttattttatgtctgctttgattcttagtgacttgttggatcattgttaat |
2631734 |
T |
|
| Q |
204 |
caatggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaa |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
2631735 |
caatggttgatggaatctgtaggttgaaaattgctttttattttcaatagtttggttaatttgagttgt---tactctcacatcttgcactatattttaa |
2631831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 754482 - 754183
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||| | ||||||| | |||||||| ||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
754482 |
attccaagactggtactctgaatattcctgagtttcaaaacaactatgaacaaataggctcagatgtctacattgagagtttgatatcaccttaagcaag |
754383 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttttgt-ttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatcaa |
206 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||||| | ||||| ||||| ||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
754382 |
gattcaactgcaacatatacatggttagtttttgtattgtgttattta--ttttatgtctgatttgattcttggtgatttgttggatcattgctaatcaa |
754285 |
T |
|
| Q |
207 |
tggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaata |
306 |
Q |
| |
|
||||||| ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
754284 |
tggttgagggaatctataggttggacattac-ttttattttcaatagtatggttaatttgagttgttgattctctttaatcttgcattatattttaaata |
754186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 65 - 317
Target Start/End: Complemental strand, 7318729 - 7318478
Alignment:
| Q |
65 |
acccaaatgtctacattgagagtttgatatcaccttaagttgggattcatctgcaacatatatatggttagttttt-gtttgtgttatttatgtattatg |
163 |
Q |
| |
|
||||||| || || ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
7318729 |
acccaaaagtttatattgagagtttaatatcaccttaagctgggattcaactgcaacatatatatggttagttttttgtttgtgttatttatatgttatg |
7318630 |
T |
|
| Q |
164 |
cctgatctgattcttggtgacttgttagatcattgttaatcaatggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaat |
263 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| | |||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
7318629 |
cctgctctgattcttgatgacttgttagatcattattaatcaatggttaatgg-agctatagcttgaacattgctttttattttcaatagtttggttaa- |
7318532 |
T |
|
| Q |
264 |
ttgtgttgttgattctctcacatcttgcactatattttaaataattcgcaatca |
317 |
Q |
| |
|
||| ||||||||||||||||||| || || ||||||||||||| ||| |||||| |
|
|
| T |
7318531 |
ttgagttgttgattctctcacatattccattatattttaaatagttcacaatca |
7318478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 9565691 - 9565403
Alignment:
| Q |
19 |
ggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgggattcatctgc |
118 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||| | ||||||| ||| |
|
|
| T |
9565691 |
ggtactttgaatattcctgagtttcaaaacaactataaacaggtagcctcaaatgtctacattgagagtttgatatcaccttaggcacggattcaaatgc |
9565592 |
T |
|
| Q |
119 |
aacatatatatggttagtttttgt-ttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatcaatggttgatgga |
217 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||||| | ||||| ||||| ||||||||||||| ||||| |||||||| |||||||||||||| ||| |
|
|
| T |
9565591 |
aacattgatatggttagtttttttactgtgttattta--ttttatgtctgatttgattcttggtgatttgttggatcattgctaatcaatggttgaggga |
9565494 |
T |
|
| Q |
218 |
atctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaataatt |
309 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||| |||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
9565493 |
atctataggttggacattgc-ttttattttcaatagtatggttaatttgagttgttgattctctctaatcttgcattatattttaaataatt |
9565403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 2658954 - 2658781
Alignment:
| Q |
73 |
gtctacattgagagtttgatatcaccttaagttgggattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctg |
172 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
2658954 |
gtctacattgagagtctcatatcaccttaagcattgattcaactgcaacatatatatggttagtttttgtttgtgttatttatatgttatgcctgctctg |
2658855 |
T |
|
| Q |
173 |
attcttggtgacttgttagatcattgttaatcaatggttgatggaatctataggttgaacattgctttttctttt |
247 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2658854 |
att-ttggtgacttgttagatcattgttaattaatggttgatggaatctataggttgaacattgctttttatttt |
2658781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 7334127 - 7333853
Alignment:
| Q |
11 |
ccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgggat |
110 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||| || |||| |||||| |
|
|
| T |
7334127 |
ccaaaactggtactttaaatatccctgagtttcaaaacaactataaactgatagactcaaatgtctacattgagagtttgatatcgccctaagctgggat |
7334028 |
T |
|
| Q |
111 |
tcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatcaatggt |
210 |
Q |
| |
|
||| | |||||||||||||||||||||||| ||||||||||||| | |||| |||| | ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
7334027 |
tcaacggcaacatatatatggttagtttttatttgtgttattta--ttttatccctgctttgattattcatgacttgttagatcattgttaatcaat--- |
7333933 |
T |
|
| Q |
211 |
tgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaata |
306 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7333932 |
--------------ggttgaacactgctttttattttcaatagtttggttaa--tgagttgttgattcgctcacatcttgcactatattttaaata |
7333853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 7442839 - 7442627
Alignment:
| Q |
19 |
ggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgggattcatctgc |
118 |
Q |
| |
|
|||||||| |||||||| |||||| |||| | |||||||| ||||||| |||||||||||||||||||||||||||| || |||| ||||||||| | || |
|
|
| T |
7442839 |
ggtactttgaatattcctgagtttgaaaaaacctatgaaccgatatactcaaatgtctacattgagagtttgatatcgccctaagctgggattcaacggc |
7442740 |
T |
|
| Q |
119 |
aacatatatatggttagt--ttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatcaatggttgatgg |
216 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| | ||| | |||||||| || |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7442739 |
aacatatatatggttagtttttttatttgtgttattta--tttta---cacatctgattttttgtgacttgttggatcattgttaatcaatggttgatgg |
7442645 |
T |
|
| Q |
217 |
aatctataggttgaacat |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7442644 |
aatctataggttgaacat |
7442627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 2492278 - 2492491
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||| | || |||||| |||||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2492278 |
attccaagactgatactttgaatattccagagtttcaaaacaactatgaaccggaatactcaaatgtctacattgagagtttgatatcaccttaagctgg |
2492377 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatc-aa |
206 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||||||| | ||| || || ||||||| || ||||||||| |||||||||||||| || |
|
|
| T |
2492378 |
gattcaactgcggcatatatatggttagtttttgtgtgtgttattta--ttttacgcatgctctgatttttcttgacttgttggatcattgttaatctaa |
2492475 |
T |
|
| Q |
207 |
tggttgatggaatcta |
222 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2492476 |
tggttaatggaatcta |
2492491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 768029 - 767829
Alignment:
| Q |
122 |
atatatatggttagttttt-gtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaatcaatggttgatggaatc |
220 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | ||| ||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
768029 |
atatatatggttagttttttgtctgtgttatttattttatat--ctgctttgattcttggtgatttgttggatcattgttaatcaatggttgatggaata |
767932 |
T |
|
| Q |
221 |
tataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaataattcgcaatcatca |
320 |
Q |
| |
|
|||||||| ||||||| |||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
767931 |
tataggttcaacattg-ttttaattttcaatagtttggttaatttgagttgttaattctctcacatcttgcactatattttaaattgttcacaatcatga |
767833 |
T |
|
| Q |
321 |
attg |
324 |
Q |
| |
|
|||| |
|
|
| T |
767832 |
attg |
767829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 9594479 - 9594165
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagtt-- |
105 |
Q |
| |
|
||||||||| || |||||| ||||||| |||||||||||||||| || |||| |||||| ||||||||||||||| | |||||||||||| || |
|
|
| T |
9594479 |
attccaaaactgttacttttaatattcttgagtttcaaaacaactgtgctcagaagcacccaatagtctacattgagagtctcatatcaccttaacttaa |
9594380 |
T |
|
| Q |
106 |
----gggattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgtta |
201 |
Q |
| |
|
| |||| || ||| ||| |||||||||||| || |||| | |||||||| ||| | ||||||||||||| || || ||||||||||| |
|
|
| T |
9594379 |
agcatgcattcgacttcaatatacatatggttagttgtttgttgtttaatttatgt-------ctgctttgattcttggtgaatt-ttggatcattgtta |
9594288 |
T |
|
| Q |
202 |
atcaatggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatatttt |
301 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
9594287 |
atcaatggttgatggaatctataggttcaacattgcttcttattttcaatagtttggttaatttgagttgttgattctcacatatcttgcactatatttt |
9594188 |
T |
|
| Q |
302 |
aaataattcgcaatcatcaattg |
324 |
Q |
| |
|
||||| ||| ||||||| ||||| |
|
|
| T |
9594187 |
aaatagttcacaatcatgaattg |
9594165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 9561848 - 9561716
Alignment:
| Q |
18 |
tggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgggattcatctg |
117 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| ||||||| || |||| |||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
9561848 |
tggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactg |
9561749 |
T |
|
| Q |
118 |
caacatatatatggttag-tttttgtttgtgtt |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
9561748 |
caacatatatatggttagttttttgtttgtgtt |
9561716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 2502380 - 2502554
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgg |
107 |
Q |
| |
|
||||||||| ||| ||||| |||||||| |||||||||||||||||||| || | | | ||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
2502380 |
attccaaaactggcactttgaatattcctgagtttcaaaacaactatgagcatagagatgcaattttctacattgagagtttgatatcaccttaagcatg |
2502479 |
T |
|
| Q |
108 |
gattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtg |
182 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| |||||||||| | | ||||||| | |||||||||||| |
|
|
| T |
2502480 |
gattcaactgcaacatatatatggttagttttaatttctgttatttatatgtcatgcctgctttgattcttggtg |
2502554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 7442626 - 7442526
Alignment:
| Q |
205 |
aatggttgatggaatctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcacatcttgcactatattttaaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||| ||||| |||| |||| ||||||||| ||||||||||| |
|
|
| T |
7442626 |
aatggttgatggaatctataggttgaacatag-tttttattttcaatagtttggttaatttgagttgtagattttctcgcatcttgcattatattttaaa |
7442528 |
T |
|
| Q |
305 |
ta |
306 |
Q |
| |
|
|| |
|
|
| T |
7442527 |
ta |
7442526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 666955 - 666829
Alignment:
| Q |
88 |
ttgatatcaccttaagttgggattcatctgcaacatatatat----ggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtga |
183 |
Q |
| |
|
||||||||| ||||||| || ||||| || ||||||||| || ||||||||||||||||||| |||||| | ||||| | | ||||||||||||| |
|
|
| T |
666955 |
ttgatatcaacttaagtaggtattcaactacaacatataaataaatggttagtttttgtttgtgtaatttattt--tatgcttcctttgattcttggtga |
666858 |
T |
|
| Q |
184 |
cttgttagatcattgttaatcaatggttg |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
666857 |
cttgttggatcattgttaatcaatggttg |
666829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 7423923 - 7423856
Alignment:
| Q |
218 |
atctataggttgaacattgctttttcttttcagtagtttggttaatttgtgttgttgattctctcaca |
285 |
Q |
| |
|
||||||||||| |||| || ||||| |||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7423923 |
atctataggttcaacagtggtttttattttcaatagtttggttaatttgagttgttgattctctcaca |
7423856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 768199 - 768120
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagt |
87 |
Q |
| |
|
||||||||| || |||||| ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
768199 |
attccaaaactgctacttttaatattcttgagtttcaaaacaactatgctcagatgaacccaaaagtctacattgagagt |
768120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 9608138 - 9608057
Alignment:
| Q |
72 |
tgtctacattgagagtttgatatcaccttaag-ttgggattcatctgcaacatatatatggttagtttttgtttgtgttatt |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||| ||| |||||||||| |||||||| | ||||| ||||| |
|
|
| T |
9608138 |
tgtctacaacgagagtttgatatcaccttaagcatgagattcaagtgctacatatatattgttagtttctatttgtattatt |
9608057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 9586987 - 9586959
Alignment:
| Q |
73 |
gtctacattgagagtttgatatcacctta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9586987 |
gtctacattgagagtttgatatcacctta |
9586959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 41456281 - 41456420
Alignment:
| Q |
18 |
tggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcaccttaagttgggattcatctg |
117 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||| || | |||| ||| |||||||||||||||| ||||||||||||| | ||||| || |
|
|
| T |
41456281 |
tggtactttgaatattcctgagtttcaaaacaactatgaacggacagaccctaatatctacattgagagtttaatatcaccttaagcacgaattcaaatg |
41456380 |
T |
|
| Q |
118 |
caacatatatatggttagtttttgtttgtgttatttatgt |
157 |
Q |
| |
|
|||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
41456381 |
caacgttgatatggttaatttttgtttgtgttatttatgt |
41456420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 34243 - 34336
Alignment:
| Q |
107 |
ggattcatctgcaacatatatatggttagtttttgtttgtgttatttatgtattatgcctgatctgattcttggtgacttgttagatcattgttaat |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
34243 |
ggattcaactgcaacatatatatggttagtttttgtttgtgttatttatg--ttatgcctgctctgatt-ttggtgacttgtttgatcattgttaat |
34336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 34331 - 34397
Alignment:
| Q |
258 |
gttaatttgtgttgttgattctctcacatcttgcactatattttaaataattcgcaatcatcaattg |
324 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
34331 |
gttaatttgagttgttgattctctcacatcttgcactatattttaaatagttcacaatcatgaattg |
34397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 20301672 - 20301763
Alignment:
| Q |
65 |
acccaaatgtctacattgagagtttgatatcaccttaagt-tgggattcatctgcaacatatatatggttagtttttgtttgtgttatttat |
155 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| || || ||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
20301672 |
acccaaaagtctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttagtttctgtttgtgttatttat |
20301763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 20306085 - 20306176
Alignment:
| Q |
65 |
acccaaatgtctacattgagagtttgatatcaccttaagt-tgggattcatctgcaacatatatatggttagtttttgtttgtgttatttat |
155 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| || || ||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
20306085 |
acccaaaagtctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttagtttctgtttgtgttatttat |
20306176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 20310489 - 20310580
Alignment:
| Q |
65 |
acccaaatgtctacattgagagtttgatatcaccttaagt-tgggattcatctgcaacatatatatggttagtttttgtttgtgttatttat |
155 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| || || ||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
20310489 |
acccaaaagtctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttagtttctgtttgtgttatttat |
20310580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 20293225 - 20293316
Alignment:
| Q |
65 |
acccaaatgtctacattgagagtttgatatcaccttaag-ttgggattcatctgcaacatatatatggttagtttttgtttgtgttatttat |
155 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| | || || |||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
20293225 |
acccaaaagtctacattgagagtttaatatcaccttaagcaagagacacaactgcaacatagatatggttagtttctgtttgttttatttat |
20293316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 39299222 - 39299305
Alignment:
| Q |
73 |
gtctacattgagagtttgatatcaccttaagt-tgggattcatctgcaacatatatatggttagtttttgtttgtgttatttat |
155 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| || |||||| || ||| || || |||||||||||||||||||||||||||| |
|
|
| T |
39299222 |
gtctacattgagagcttgatattaccttaagcatgagattcaactacaagatctacatggttagtttttgtttgtgttatttat |
39299305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 89324 - 89416
Alignment:
| Q |
8 |
attccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgagagtttgatatcacctt |
100 |
Q |
| |
|
|||| |||||||||||||| || ||||| | | ||||||||| | || | ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
89324 |
attcaaaaaatggtactttgaagattcctgtgattcaaaacatcaatcgtcggatggacccaaaagtctacattgagagtttgatatcacctt |
89416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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