View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10952_low_7 (Length: 321)

Name: NF10952_low_7
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10952_low_7
NF10952_low_7
[»] chr8 (1 HSPs)
chr8 (13-303)||(44581271-44581564)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 44581564 - 44581271
Alignment:
Q  13 gagatgaacatgtgcaccaactaattagccaagtttgaaataaggtctattagtgatttgtcgactgtgtttgatccctcgattgagcttcacttgttgc 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  44581564 gagatgaacatgtgcgccaactaattagccaagtttgaaataaggtctattagttatttatcgactgtgtttgatccctcgattgagcttcacttgttgc 44581465  T
Q  113 ttaagatagacagtggcggaatatggtggatgcggtcaatagcggtggcggagccgccactcccactcatgggcataggtg---gtgggtacacttgaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  44581464 ttaagatagacagtggcggaatatggtggatgcggtcaatagcagtggcggagccgccactcccactcatgggcataggtggtggtgggtacacttgaag 44581365  T
Q  210 atgtgtttgcgatttcaatatatttagagattatgatgaaaatatttcatgtattgagggaagaaaataagaggtaatcttgtttggactcatg 303  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  44581364 atgtgtttgcaatttcaatatatttagagactatgatgaaaatatttcatgtattgagggaacaaaataggagataatcttgtttggactcatg 44581271  T

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