View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10952_low_8 (Length: 266)

Name: NF10952_low_8
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10952_low_8
NF10952_low_8
[»] chr3 (2 HSPs)
chr3 (4-251)||(9173169-9173437)
chr3 (194-243)||(25904196-25904245)
[»] chr7 (2 HSPs)
chr7 (107-254)||(15897523-15897671)
chr7 (3-107)||(15897392-15897500)
[»] chr8 (1 HSPs)
chr8 (107-253)||(12298248-12298395)
[»] chr2 (2 HSPs)
chr2 (107-244)||(2203365-2203502)
chr2 (3-107)||(2203525-2203633)
[»] chr5 (2 HSPs)
chr5 (107-254)||(18860461-18860609)
chr5 (3-107)||(18860632-18860740)
[»] chr1 (2 HSPs)
chr1 (107-254)||(24319526-24319674)
chr1 (3-107)||(24319697-24319805)
[»] chr6 (2 HSPs)
chr6 (107-198)||(28653614-28653705)
chr6 (49-107)||(28654441-28654499)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 9173437 - 9173169
Alignment:
Q  4 caagaagttctttgtgtctcagtgctcctaaagaagaatcaaatc----ccaaaattccactaaagttaggttcacattcaagtagttactaaagaatga 99  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9173437 caagaagttctttgtgtctctgtgctcctaaagcagaatcaaatcgtatccaaaattccactaaagttaggttcacattcaagtagttactaaagaatga 9173338  T
Q  100 attttcac---------------------aaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtaga 178  Q
    ||||||||                     ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  9173337 attttcactctgatcttgagcttgttctcaaaactccaaccattaatgtaactttaaaataagcaggtatctacatgcttctaagttcatacattgtaga 9173238  T
Q  179 aagccaaccatttccttccagcttataatgactaataatattattccattctaattcaaattcttcaaggact 251  Q
    |||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9173237 aagccaaccat----ttccagcttataatgactaataagattattccattctaattcaaattcttcaaggact 9173169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 25904196 - 25904245
Alignment:
Q  194 ttccagcttataatgactaataatattattccattctaattcaaattctt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25904196 ttccagcttataatgactaataatattattccattctaattcaaattctt 25904245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 15897523 - 15897671
Alignment:
Q  107 caaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtagaaagccaaccatttccttccagcttataa 206  Q
    ||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||  || |||    
T  15897523 caaaattccagccataaatgtatctttaaaatatgcaggtatccacatgcttcttagatcatacattgtagaaagccatccatttccttccaagttgtaa 15897622  T
Q  207 tgactaataatattattccattctaattcaaattctt-caaggactctg 254  Q
    | ||||||||||||||||||||| || |||||||||| |||||||||||    
T  15897623 tcactaataatattattccattccaaatcaaattcttccaaggactctg 15897671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 15897392 - 15897500
Alignment:
Q  3 gcaagaagttctttgtgtctcagtgctcctaaagaagaatcaaatc----ccaaaattccactaaagttaggttcacattcaagtagttactaaagaatg 98  Q
    |||| |||||||||||||||  ||||| |||||| |||||||||||    ||| |||||||||||||||| |||   |||||||||||| | ||||||||    
T  15897392 gcaaaaagttctttgtgtctttgtgctgctaaagcagaatcaaatcgcacccagaattccactaaagttaagttatgattcaagtagttgccaaagaatg 15897491  T
Q  99 aattttcac 107  Q
    |||||||||    
T  15897492 aattttcac 15897500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 12298248 - 12298395
Alignment:
Q  107 caaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtagaaagccaaccatttccttccagcttataa 206  Q
    ||||| |||| |||| ||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |  | ||    
T  12298248 caaaattccagccataaatatatctttaaaataagctggtatccacatgcgtctaagttcatacattgtagaaagccaaccattttcttccaacccaaaa 12298347  T
Q  207 tgactaataatattattccattctaattcaaattcttca-aggactct 253  Q
    | | ||||||||| ||||||||| ||||||||||||||| ||||||||    
T  12298348 tcattaataatatcattccattcaaattcaaattcttcagaggactct 12298395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 2203502 - 2203365
Alignment:
Q  107 caaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtagaaagccaaccatttccttccagcttataa 206  Q
    ||||| |||| |||| ||||||||||||||||| ||  |||||||||||||||| || |||||||||||||||||||| |||||||||||||   | |||    
T  2203502 caaaattccagccataaatgtatctttaaaatatgccggtatccacatgcttcttagatcatacattgtagaaagccatccatttccttccaagctgtaa 2203403  T
Q  207 tgactaataatattattccattctaattcaaattcttc 244  Q
    | ||||||||||||||||||||| || |||||||||||    
T  2203402 tcactaataatattattccattccaaatcaaattcttc 2203365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 2203633 - 2203525
Alignment:
Q  3 gcaagaagttctttgtgtctcagtgctcctaaagaagaatcaaatc----ccaaaattccactaaagttaggttcacattcaagtagttactaaagaatg 98  Q
    |||| |||||||||||||||  ||||| |||||| |||||||||||    ||| ||||| |||||||||| |||   |||||||||||| | ||||||||    
T  2203633 gcaaaaagttctttgtgtctttgtgctgctaaagcagaatcaaatcgcacccagaattctactaaagttaagttatgattcaagtagttgccaaagaatg 2203534  T
Q  99 aattttcac 107  Q
    |||||||||    
T  2203533 aattttcac 2203525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 254
Target Start/End: Complemental strand, 18860609 - 18860461
Alignment:
Q  107 caaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtagaaagccaaccatttccttccagcttataa 206  Q
    ||||| |||| |||| ||||||||||||||||| ||  |||||||||||||||| || ||||| |||||||||||||| |||||||||||||   | |||    
T  18860609 caaaattccagccataaatgtatctttaaaatatgccggtatccacatgcttcttagatcatatattgtagaaagccatccatttccttccaagctgtaa 18860510  T
Q  207 tgactaataatattattccattctaattcaaattctt-caaggactctg 254  Q
    | ||||||||||||||||||||| || |||||||||| |||||||||||    
T  18860509 tcactaataatattattccattccaaatcaaattcttccaaggactctg 18860461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 18860740 - 18860632
Alignment:
Q  3 gcaagaagttctttgtgtctcagtgctcctaaagaagaatcaaatc----ccaaaattccactaaagttaggttcacattcaagtagttactaaagaatg 98  Q
    |||| |||||||||||||||  ||||| |||||| | |||||||||    ||| ||||| |||||||||| |||   |||||||||||| | ||||||||    
T  18860740 gcaaaaagttctttgtgtctttgtgctgctaaagcataatcaaatcgcacccagaattctactaaagttaagttatgattcaagtagttgccaaagaatg 18860641  T
Q  99 aattttcac 107  Q
    |||||||||    
T  18860640 aattttcac 18860632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 254
Target Start/End: Complemental strand, 24319674 - 24319526
Alignment:
Q  107 caaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtagaaagccaaccatttccttccagcttataa 206  Q
    ||||| |||| |||| ||||||||||||||||| |   |||||||||||||||| || ||||||||||||||||||   |||||||||||||   |||||    
T  24319674 caaaattccagccataaatgtatctttaaaatatgtcggtatccacatgcttcttagatcatacattgtagaaagcactccatttccttccaagctataa 24319575  T
Q  207 tgactaataatattattccattctaattcaaattctt-caaggactctg 254  Q
    | ||||||||||||||||||||  || |||||||||| |||||||||||    
T  24319574 tcactaataatattattccatttcaaatcaaattcttccaaggactctg 24319526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 24319805 - 24319697
Alignment:
Q  3 gcaagaagttctttgtgtctcagtgctcctaaagaagaatcaaatc----ccaaaattccactaaagttaggttcacattcaagtagttactaaagaatg 98  Q
    |||| |||||||||||| ||  ||||| |||||| |||||||||||    ||| |||||||||||||||| |||   ||| |||||||| | ||||||||    
T  24319805 gcaaaaagttctttgtgcctttgtgctgctaaagcagaatcaaatcgcacccagaattccactaaagttaagttatgatttaagtagttcccaaagaatg 24319706  T
Q  99 aattttcac 107  Q
    |||||||||    
T  24319705 aattttcac 24319697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 28653705 - 28653614
Alignment:
Q  107 caaaactccaaccattaatgtatctttaaaataagcatgtatccacatgcttctaagttcatacattgtagaaagccaaccatttccttcca 198  Q
    ||||| || |||||| ||| |||||||||| |||| | ||||||||||||||| ||| ||||| ||| ||||||| ||  ||||| ||||||    
T  28653705 caaaattctaaccataaatatatctttaaactaagtaggtatccacatgcttcaaagatcatatattttagaaagtcattcattttcttcca 28653614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 28654441 - 28654499
Alignment:
Q  49 ccaaaattccactaaagttaggttcacattcaagtagttactaaagaatgaattttcac 107  Q
    |||| ||||||||||||| || |||  |||||||||||||  |||||||||||||||||    
T  28654441 ccaatattccactaaagtaagattcttattcaagtagttagcaaagaatgaattttcac 28654499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University