View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10952_low_9 (Length: 248)
Name: NF10952_low_9
Description: NF10952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10952_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6955884 - 6956122
Alignment:
| Q |
1 |
gattttaatcatggaattagggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataac |
100 |
Q |
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| T |
6955884 |
gattttaatcatggaattagggaaaaaggaaatatactccgctacgacaaccaactactcagcaagttctgattgacaaaatatctgcaggtcctataac |
6955983 |
T |
|
| Q |
101 |
tctgattgcaattggaactcatacaaatttagccattttccttatgaataatccacacctaaagaaaaatgtggaacatgtttacgtcatgggtggtggt |
200 |
Q |
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|||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
6955984 |
tctgattgtgactggcgcgcatacaaatttagccattttccttatgaataatccacacctaaagaaaaatgtggaacatgtttacatcatgggtggtgtt |
6956083 |
T |
|
| Q |
201 |
ataaggtcaaaaacttgttgcaccaaaaatgcttcatct |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
6956084 |
ataaggtcaaaaacttgttgcaccaaaaatgcttcatct |
6956122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6966056 - 6966183
Alignment:
| Q |
1 |
gattttaatcatggaattagggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6966056 |
gattttaatcatggaattagggaaagaggaaatatactccgctacgccaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataac |
6966155 |
T |
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| Q |
101 |
tctgattgcaattggaactcatacaaat |
128 |
Q |
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| T |
6966156 |
tctgattgcaattggaactcatacaaat |
6966183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 49116125 - 49115934
Alignment:
| Q |
19 |
agggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataactctgattgcaattggaac |
118 |
Q |
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||||||| ||||||||||| || ||| |||||||||||||| ||||| ||||||| ||| | ||||||||||| | |||| || || || ||| | |
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| T |
49116125 |
agggaaaaaggaaatatacaccactagagcaaccaactgctcaacaagtgttgattgaaaaagtgtctgcaggtcccacaactttgtttatgatgggagc |
49116026 |
T |
|
| Q |
119 |
tcatacaaatttagccattttccttatgaataatccacacctaaagaaaaatgtggaacatgtttacgtcatgggtggtggtataaggtcaa |
210 |
Q |
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|||||||||| | || |||||||| ||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||| ||||||||| |
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| T |
49116025 |
tcatacaaatgttgcaattttcctaatgaataatccacaccttaagaaaaatgtggaacatatttatataatgggtggaggtgtaaggtcaa |
49115934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 49103838 - 49103636
Alignment:
| Q |
8 |
atcatggaattagggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataactctgatt |
107 |
Q |
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||||||| || ||||||| ||||||||||| || ||| |||||||||||||| ||||| ||||||| ||| | ||||||||||| | |||| || || |
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| T |
49103838 |
atcatggcatcagggaaaaaggaaatatacaccactagagcaaccaactgctcaacaagtgttgattgaaaaagtgtctgcaggtcccacaactttgttt |
49103739 |
T |
|
| Q |
108 |
gcaattggaactcatacaaatttagccattttccttatgaataatccacacctaaagaaaaatgtggaacatgtttacgtcatgggtggtggtataaggt |
207 |
Q |
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|| ||| ||||||||||| | || |||||||| ||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||| |||| | |
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| T |
49103738 |
atgatgggagctcatacaaatgttgcaattttcctaatgaataatccacaccttaagaaaaatgtggaacatatttatataatgggtggaggtgtaagat |
49103639 |
T |
|
| Q |
208 |
caa |
210 |
Q |
| |
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||| |
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|
| T |
49103638 |
caa |
49103636 |
T |
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