View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_high_6 (Length: 396)
Name: NF10953_high_6
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 132 - 393
Target Start/End: Complemental strand, 47385915 - 47385654
Alignment:
| Q |
132 |
ctcttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggt |
231 |
Q |
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| T |
47385915 |
ctcttcttgttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggt |
47385816 |
T |
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| Q |
232 |
gggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaat |
331 |
Q |
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| T |
47385815 |
gggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaat |
47385716 |
T |
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| Q |
332 |
tatggatttttggtttcttagtagctattaatactggactacaaggttctctctgctcctcc |
393 |
Q |
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| T |
47385715 |
tatggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctcc |
47385654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 135 - 390
Target Start/End: Original strand, 47373020 - 47373275
Alignment:
| Q |
135 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtggg |
234 |
Q |
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| T |
47373020 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtggg |
47373119 |
T |
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| Q |
235 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
334 |
Q |
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| T |
47373120 |
accttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattct |
47373219 |
T |
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| Q |
335 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctctgctcc |
390 |
Q |
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| T |
47373220 |
gagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttgctcc |
47373275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 47386046 - 47385962
Alignment:
| Q |
1 |
ttctcctctgtttcctcttcttcaacatcttctattacttcaccaaccatttcattttcatataattcttcttctttattttgtg |
85 |
Q |
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| T |
47386046 |
ttctcctctgtttcctcttcttcaacatcttctattacttcaccaaccatttcattttcatataattcttcttctttattatgtg |
47385962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
201 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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