View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_low_12 (Length: 287)
Name: NF10953_low_12
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 11195706 - 11195954
Alignment:
| Q |
23 |
aatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttat |
122 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |
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| T |
11195706 |
aatacacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaaccacgtta---acatcgagccacatgaagaccaaatcaattgctttat |
11195802 |
T |
|
| Q |
123 |
tgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgc |
222 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11195803 |
tgatcttttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgc |
11195902 |
T |
|
| Q |
223 |
ttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11195903 |
ttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
11195954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 11155259 - 11155507
Alignment:
| Q |
23 |
aatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttat |
122 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| | || ||||||||||| ||||||| |||||||||||| | ||||||||||||| ||| |||| |
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| T |
11155259 |
aatacacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaatcacgtta---acatcgagccacgtaaagaccaaatcaagtgcattat |
11155355 |
T |
|
| Q |
123 |
tgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgc |
222 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||| |
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| T |
11155356 |
tgatcttttccttttcttttgacgaaagcatcaaactaatatccttatcatttatagcattcctcatgttgtatgcatacgtctctagtacaactctcgc |
11155455 |
T |
|
| Q |
223 |
ttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
274 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11155456 |
ttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
11155507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 11208363 - 11208620
Alignment:
| Q |
26 |
acacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattga |
125 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||||||||| | ||| |||||| | || |||||| | ||||||||||||| ||| ||||||| |
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| T |
11208363 |
acacttgaaagaatgctcctataacactcaaaatcttgttgttctactacc---ttattagcgtcaagccacatgaagaccaaatcaactgcgttattga |
11208459 |
T |
|
| Q |
126 |
tcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| || ||||||||| | || |||||| |||||||| |||||||||| | ||| ||||| ||| |
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| T |
11208460 |
tcttttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgattc |
11208559 |
T |
|
| Q |
226 |
tagcttcttcatatacctcttgtcttcatctttgtacttctcagcttctctgctcctcctc |
286 |
Q |
| |
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| ||||||| ||| |||| |||||||||||||||| ||||||||||| ||| || ||||| |
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| T |
11208560 |
aaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttcactgatcatcctc |
11208620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 11169541 - 11169788
Alignment:
| Q |
26 |
acacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattga |
125 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||||||| |||||||| |||||| || |||||| | |||||||||||| |||| ||||||| |
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| T |
11169541 |
acacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccac---attaacgtcaagccacttaaagaccaaatcagttgcgttattga |
11169637 |
T |
|
| Q |
126 |
tcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcatt-cctcatgttgtatgcatacttctctaatacatctctcgctt |
224 |
Q |
| |
|
| ||| |||||||||||||||||| |||| | ||||||||| ||||||||| | ||| |||||| |||||||| ||| |||||| | ||| |||||||| |
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|
| T |
11169638 |
tgtttgccttttcttttgacgaaatcttcgagctaatatccggatcatttat-gaattccctcatattgtatgcgtacatctctagtgcatttctcgctt |
11169736 |
T |
|
| Q |
225 |
ctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttctct |
276 |
Q |
| |
|
| | ||||||| ||| |||| |||||||||||||||| || ||||||||||| |
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|
| T |
11169737 |
caaccttcttcctatgcctcatgtcttcatctttgtatttgtcagcttctct |
11169788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 11274925 - 11275169
Alignment:
| Q |
26 |
acacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattga |
125 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||||||||| |||||||| |||||| || |||||| | |||||||||||| |||| ||||||| |
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|
| T |
11274925 |
acacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccac---attaacgtcaagccacttaaagaccaaatcagttgcattattga |
11275021 |
T |
|
| Q |
126 |
tcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttc |
225 |
Q |
| |
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| ||||||||||||||| | ||||||||| | ||||||| ||||||||| || |||||| |||||||| |||||||||| | ||| ||||||||| |
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| T |
11275022 |
tgttttccttttcttttaatgaaagcttcgagataatatcgggatcatttatgaaatccctcatattgtatgcgtacttctctagtgcatttctcgcttc |
11275121 |
T |
|
| Q |
226 |
tagcttcttcatatacctcttgtcttcatctttgtacttctcagcttc |
273 |
Q |
| |
|
| ||| ||| ||| ||| |||||||||||||||||||||||||||| |
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|
| T |
11275122 |
aacctttttcctatgcctaatgtcttcatctttgtacttctcagcttc |
11275169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 92 - 276
Target Start/End: Original strand, 11165377 - 11165561
Alignment:
| Q |
92 |
agccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgt |
191 |
Q |
| |
|
|||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| | |||| ||| ||||||||| | || |||||| | |
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|
| T |
11165377 |
agccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
11165476 |
T |
|
| Q |
192 |
tgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttctct |
276 |
Q |
| |
|
||||||| ||| |||||| | ||| ||||||||| | ||||||| ||| |||| |||||||||||||||| |||||||||||||| |
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|
| T |
11165477 |
tgtatgcgtacctctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctct |
11165561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 11242199 - 11242021
Alignment:
| Q |
26 |
acacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattga |
125 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||| ||||||| ||||||| ||||||||| ||||| | |||||||||| |||||||||||| | |
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|
| T |
11242199 |
acacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccac---attaacatcaagccatgtgaagaccaaat-aattgctttattaa |
11242104 |
T |
|
| Q |
126 |
tcttttccttttct--tttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttct |
206 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| | | |||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
11242103 |
tcttttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttct |
11242021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 274
Target Start/End: Original strand, 11132051 - 11132225
Alignment:
| Q |
100 |
taagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgca |
199 |
Q |
| |
|
||||||| ||||||||| |||| |||| |||||| |||| | |||||||||||| |||| |||||||| ||||| |||||||||||||| |||||| |
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|
| T |
11132051 |
taagaccgaatcaattgtgttatcgatcacttccttgtcttctaacgaaagcttcatcataatctccttatcgtttatggcattcctcatgttatatgca |
11132150 |
T |
|
| Q |
200 |
tacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
274 |
Q |
| |
|
||||||| ||| ||| ||| | ||||| ||||||| ||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
11132151 |
cacttctccaatgcatttcttgtttctaccttcttcctatacatcttgtcttcatccttgtacttctcagcttct |
11132225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 11315841 - 11315745
Alignment:
| Q |
106 |
caaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatac |
202 |
Q |
| |
|
|||| ||||||| | ||||||||||| ||||||||||||| ||||| | || ||||||||||||||||| || |||| | |||| |||||||||||| |
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|
| T |
11315841 |
caaaccaattgcatcattgatctttttcttttcttttgacaaaagcataaagctaatatccttatcattaatggcatccttcatcttgtatgcatac |
11315745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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