View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_low_14 (Length: 266)
Name: NF10953_low_14
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 45362382 - 45362148
Alignment:
| Q |
17 |
tgaagctcgaggtgttgtatgagactgagaatgagaccttcttgaagcatttgatctcctcactataacatgaagcttcccatcttctttgattacagct |
116 |
Q |
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| T |
45362382 |
tgaagctcgaggtgttgtatgagactgagaatgagaccttcttgaagcatttgatctcctcactataacatgaagcttcccatcttctttgattacagct |
45362283 |
T |
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| Q |
117 |
tctgtttccaaacactgtcttccatcatccaacgacatcacatcagagtcaacatgaatggaaacaatggtaccagcagtgtctggaaactgttctgaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362282 |
tctgtttccaaacactgtcttccatcatccaacgacatcacatcagagtcaacatgaatggaaacaatggtaccagcagtgtctggaaactgttctgaga |
45362183 |
T |
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| Q |
217 |
taagcgttcttgctcctctaaactcaaacatgaac |
251 |
Q |
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| T |
45362182 |
taagcattcttgctcctctaaactcaaacatgaac |
45362148 |
T |
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Back To:
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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 25039157 - 25038966
Alignment:
| Q |
56 |
tcttgaagcatttgatctcctcactataacatgaagcttcccatcttctttgattacagcttctgtttccaaacactgtcttccatcatccaacgacatc |
155 |
Q |
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|||||||||||||||| | || || | | |||||| || ||||||||||||||| |||| || |||||||| || ||| | ||||||| ||||| |
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| T |
25039157 |
tcttgaagcatttgattttctaacagtgatatgaagtttaccatcttctttgatttcagcatcagtttccaatg---gtgttctaccatccaatgacatg |
25039061 |
T |
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| Q |
156 |
acatcagagtcaacatgaatggaaacaatggtaccagcagtgtctggaaactgttctgagataagcgttcttgctcctctaaactcaaacatgaa |
250 |
Q |
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|||||||| |||||||| || |||||||||| |||||||||||| ||||||||||| || || | | |||||||||||||||||||||||||| |
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| T |
25039060 |
acatcagaatcaacatggattgaaacaatggaaccagcagtgtcaggaaactgttcagaaatcaacaaccttgctcctctaaactcaaacatgaa |
25038966 |
T |
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