View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10953_low_15 (Length: 248)
Name: NF10953_low_15
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 8776462 - 8776220
Alignment:
| Q |
1 |
taattttttggatttgtttctttnnnnnnncggaacagcgtgcatgtttgtggaccgtttgcaaaatatcattaatatagggatacactgtgaagttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
8776462 |
taattttttggatttgtttctttaaaaaaacggaacagcgtgcatgtttgtggaccgtttgcaaaatatcattaatatagagacacactgtgaagttgaa |
8776363 |
T |
|
| Q |
101 |
gatatttaccgatgtatcatatgtttttgaagaaacgaaaggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8776362 |
gatatttaccgatgtatcatatgtttttgaagaaacgaaaggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaatta |
8776263 |
T |
|
| Q |
201 |
ttctcatcctccacattggatgtgttggtggtattcttctcac |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8776262 |
ttctcatcctccacattggatgtgttggtggtattcttgtcac |
8776220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 8788169 - 8787973
Alignment:
| Q |
40 |
gtgcatgtttgtggaccgtttgcaaaatatcattaatatagggatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaa |
139 |
Q |
| |
|
|||||||||||| |||| || ||||||||| | ||||| ||| ||||||| |||||||||| | |||| |||| ||||||| ||||||||| |||||| |
|
|
| T |
8788169 |
gtgcatgtttgtagaccattagcaaaatatgactaatacagg--tacactgcaaagttgaagacacttacagatgaatcatatctttttgaaggaacgaa |
8788072 |
T |
|
| Q |
140 |
aggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattctt |
238 |
Q |
| |
|
|||||| | |||||||| | |||||| ||||||||| | | ||||| ||| ||| ||||| | |||||||||| ||| |||||| ||||||||||| |
|
|
| T |
8788071 |
aggggtatcttcacaaacttgataaggttccaaaatagtaacatctggatcggagcaattacccccatcctccaccgtgggtgtgtttgtggtattctt |
8787973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 8782411 - 8782215
Alignment:
| Q |
40 |
gtgcatgtttgtggaccgtttgcaaaatatcattaatatagggatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaa |
139 |
Q |
| |
|
|||||||||||| |||| |||| ||||||| | ||||| || | ||| ||| |||||||||| | |||| |||| ||||||| | ||||||| |||||| |
|
|
| T |
8782411 |
gtgcatgtttgtagaccatttgaaaaatattactaatacag--aaacagtgtaaagttgaagaaacttacagatgaatcatatatatttgaaggaacgaa |
8782314 |
T |
|
| Q |
140 |
aggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattctt |
238 |
Q |
| |
|
|||| | |||||||||||||||||| | ||||||| | | ||||| ||| |||| | || | |||||||||| ||||||||||| |||||| |||| |
|
|
| T |
8782313 |
agggttagcttcacaaattggataagatttcaaaatagttacatctggatcggagggaatacccccatcctccaccttggatgtgtttgtggtactctt |
8782215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 2541252 - 2541456
Alignment:
| Q |
41 |
tgcatgtttgtggaccgtttgcaaaatatcattaatatagggatacactgtg--aagttgaagatatttaccgatgtatcatatgtttttgaagaaacga |
138 |
Q |
| |
|
||||||||| ||| | |||||||||||| | ||||| || |||| |||||| |||||||||| | |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
2541252 |
tgcatgtttaaggatcatttgcaaaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacga |
2541351 |
T |
|
| Q |
139 |
aaggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattctt |
238 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
2541352 |
aaggggtgtttccacagattggaaaagaatccaaaataattagatctgaatcagaggaattactatcatcctccacattggatgtgttagtggcattctt |
2541451 |
T |
|
| Q |
239 |
ctcac |
243 |
Q |
| |
|
|||| |
|
|
| T |
2541452 |
atcac |
2541456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University