View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_low_18 (Length: 202)
Name: NF10953_low_18
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 52512657 - 52512497
Alignment:
| Q |
42 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
141 |
Q |
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| T |
52512657 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
52512558 |
T |
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| Q |
142 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgta |
202 |
Q |
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| T |
52512557 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgta |
52512497 |
T |
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