View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_low_2 (Length: 705)
Name: NF10953_low_2
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_2 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 408 - 692
Target Start/End: Original strand, 4963491 - 4963775
Alignment:
| Q |
408 |
ctctttctccagcctagaaatcttctccatcatcgcttcatcgtctttcctcttcatcaccgcttcatcgagcagtccaacttctctaaatttcttccaa |
507 |
Q |
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| T |
4963491 |
ctctttctccagcctagaaatcttctccatcatcgcttcatcgtctttccttttcatcaccgcttcatcgagcagtccaacttctctaaatttcttccaa |
4963590 |
T |
|
| Q |
508 |
tcttcagcataactagaagccaccaccacatcaccgcctgaatcagtcaaagaacccaacggcggcggtggcagaggttcatcggcgaagacgacagctt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4963591 |
tcttcagcataactagaagccaccaccacatcaccgccggtatcagtcaaagaacccaacggcggcggtggcagaggttcatcggcgaagacaacagctt |
4963690 |
T |
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| Q |
608 |
ttccctttgcgagcgcagacttaggtgtgacaccgattcgatgcggtgtgaatggtgctggtgtaccgataggtcgtgattttct |
692 |
Q |
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| T |
4963691 |
ttccctttgcgagcgcagacttaggtgtgacaccgattcgatgcggtgtgaatggtgctggtgtaccgataggtcgtgattttct |
4963775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 4963132 - 4963387
Alignment:
| Q |
18 |
tatctaattcacaaaaaacctaatctaactcaaatgtaattaatattttgtgacatgttgtgtccgtatacgactctgctacacatcggacacta-acat |
116 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4963132 |
tatctaattcacaaaaaacctaatttatctcaaatgtaattaatattttgtgacatgttgggtccgtatacgactctgctacacatcggacactagacat |
4963231 |
T |
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| Q |
117 |
gtttatagccttaaatctaaagattctacatacatatatcaaaagagttcattcctcaaagttacagtaatatctactacatcaatatgctacaaaactc |
216 |
Q |
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| T |
4963232 |
gtttatagcctctaaactaaagattctaca----tatatcaaaagagttcattcctcaaagttacagtaatatctactacatcaatatgctacaaaactc |
4963327 |
T |
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| Q |
217 |
ggtatcaggtccaagaaccaactcatccggggaccaatccctagaaaaaccacctataaac |
277 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
4963328 |
ggtgtcaggtccaagaaccaactcat-cggggaccaatccctagaaaaaccatctataaac |
4963387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 410 - 696
Target Start/End: Original strand, 6568 - 6854
Alignment:
| Q |
410 |
ctttctccagcctagaaatcttctccatcatcgcttcatcgtctttcctcttcatcaccgcttcatcgagcagtccaacttctctaaatttcttccaatc |
509 |
Q |
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| T |
6568 |
ctttctcaagcctcgaaatcttctccaacatcgcttcatcgtctttcctcttcatcaccgcttcatcaagcaatccaacttctctaaacctcttccaatc |
6667 |
T |
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| Q |
510 |
ttcagcataactagaagccaccaccacatcaccgcctgaatcagtcaaagaacccaacggcggcggtggcagaggttcatcggcgaagacgacagctttt |
609 |
Q |
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| T |
6668 |
ttcagcataactagaagccaccacaacatcaccgccagaatcagtcaaagaacccaacggcggcagcggaggaggttcatcggtgaagacaacaactttt |
6767 |
T |
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| Q |
610 |
ccctttgcgagcgcagacttaggtgtgacaccgattcgatgcggtgtgaatggtgctggtgtaccgataggtcgtgattttctctgc |
696 |
Q |
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| T |
6768 |
ctctttgcgagggcagacttaggtgtgacaccgattcgatgctgtgtgaatggtgttggtgtactgataggtcatgattttctctgc |
6854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 7e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 439 - 697
Target Start/End: Complemental strand, 21835901 - 21835643
Alignment:
| Q |
439 |
atcgcttcatcgtctttcctcttcatcaccgcttcatcgagcagtccaacttctctaaatttcttccaatcttcagcataactagaagccaccaccacat |
538 |
Q |
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| T |
21835901 |
atcgcttcatcatctttcctcttcatcgccgcttcatcaagcaatccaacttctctaaacctcttccaatcttcagcataactagaagccaccacaacat |
21835802 |
T |
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| Q |
539 |
caccgcctgaatcagtcaaagaacccaacggcggcggtggcagaggttcatcggcgaagacgacagcttttccctttgcgagcgcagacttaggtgtgac |
638 |
Q |
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| T |
21835801 |
caccgtcggaatcagtcaaagaacccaacgacggcggcggaggaggttcatcggcgaagacaacaacttttttctttgcgagggcagacttaggtgtgac |
21835702 |
T |
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| Q |
639 |
accgattcgatgcggtgtgaatggtgctggtgtaccgataggtcgtgattttctctgct |
697 |
Q |
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| T |
21835701 |
accgattcgatgctgtgtgaatggtgctggtgtaccgatagctcatgattttctctgct |
21835643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 21849892 - 21849720
Alignment:
| Q |
37 |
ctaatctaactcaaatgtaattaatattttgtgacatgttgtgtccgtatacgactctgctacacatcggacacta-acatgtttatagccttaaatcta |
135 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||| ||||| ||| ||||| | |||||||||| | ||| |||||| |
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| T |
21849892 |
ctaatctaactcaaatgtaattaata--ttgtgtcatgttgtctccgtattagactctactacatatcagacaccagacatgtttattgtctttaatcta |
21849795 |
T |
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| Q |
136 |
aagattctacatacatatatcaaaagagttcattcctcaaagttacagtaatatctactacatcaatatgctacaaaac |
214 |
Q |
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| T |
21849794 |
aagatt----gtacatatatcaaaaaagttcattcttcaaagttacagtgatatctactacatcaatatgctacaaaac |
21849720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 21857806 - 21857634
Alignment:
| Q |
37 |
ctaatctaactcaaatgtaattaatattttgtgacatgttgtgtccgtatacgactctgctacacatcggacacta-acatgtttatagccttaaatcta |
135 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||| ||||| ||| ||||| | |||||||||| | ||| |||||| |
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| T |
21857806 |
ctaatctaactcaaatgtaattaata--ttgtgtcatgttgtctccgtattagactctactacatatcagacaccagacatgtttattgtctttaatcta |
21857709 |
T |
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| Q |
136 |
aagattctacatacatatatcaaaagagttcattcctcaaagttacagtaatatctactacatcaatatgctacaaaac |
214 |
Q |
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|||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21857708 |
aagatt----gtacatatatcaaaaaagttcattcttcaaagttacagtgatatctactacatcaatatgctacaaaac |
21857634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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