View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10953_low_3 (Length: 673)

Name: NF10953_low_3
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10953_low_3
NF10953_low_3
[»] chr5 (20 HSPs)
chr5 (17-365)||(3040208-3040553)
chr5 (408-657)||(3039865-3040114)
chr5 (177-352)||(30735282-30735457)
chr5 (177-352)||(25493791-25493966)
chr5 (193-355)||(30700828-30700990)
chr5 (177-355)||(40519151-40519328)
chr5 (177-355)||(30071743-30071921)
chr5 (364-556)||(2190282-2190474)
chr5 (190-355)||(20359896-20360063)
chr5 (225-355)||(34280064-34280194)
chr5 (364-461)||(17066797-17066894)
chr5 (197-356)||(24402035-24402196)
chr5 (381-495)||(20419480-20419594)
chr5 (451-556)||(17066852-17066956)
chr5 (230-306)||(7547291-7547366)
chr5 (182-289)||(21259195-21259301)
chr5 (480-558)||(20419397-20419474)
chr5 (278-330)||(9666899-9666951)
chr5 (446-494)||(25994911-25994958)
chr5 (512-556)||(3040152-3040196)
[»] chr2 (23 HSPs)
chr2 (177-356)||(20142940-20143119)
chr2 (177-347)||(13716676-13716846)
chr2 (177-352)||(19945685-19945860)
chr2 (210-347)||(27007174-27007311)
chr2 (210-356)||(14131161-14131307)
chr2 (180-353)||(38320153-38320333)
chr2 (182-356)||(32975977-32976153)
chr2 (368-494)||(24582502-24582628)
chr2 (177-320)||(37714395-37714538)
chr2 (193-323)||(35457389-35457518)
chr2 (195-356)||(3167886-3168046)
chr2 (180-336)||(31645074-31645231)
chr2 (191-343)||(4434283-4434438)
chr2 (177-355)||(37899471-37899639)
chr2 (189-355)||(27407406-27407571)
chr2 (274-355)||(31264827-31264908)
chr2 (252-335)||(31845461-31845544)
chr2 (177-281)||(24183943-24184047)
chr2 (480-556)||(24582389-24582465)
chr2 (419-494)||(24582470-24582545)
chr2 (239-309)||(5881435-5881505)
chr2 (476-513)||(34233611-34233648)
chr2 (468-556)||(25770376-25770464)
[»] chr1 (31 HSPs)
chr1 (177-358)||(35412998-35413179)
chr1 (178-336)||(10061565-10061723)
chr1 (182-357)||(29657341-29657516)
chr1 (181-357)||(35149620-35149796)
chr1 (177-324)||(43537134-43537284)
chr1 (189-343)||(26469928-26470082)
chr1 (177-318)||(21540046-21540187)
chr1 (177-356)||(48852615-48852794)
chr1 (177-314)||(23906605-23906742)
chr1 (177-311)||(11469995-11470130)
chr1 (382-519)||(19062866-19063002)
chr1 (411-520)||(32306405-32306513)
chr1 (260-352)||(9113421-9113514)
chr1 (193-261)||(49313595-49313663)
chr1 (362-425)||(8360166-8360229)
chr1 (429-520)||(21258292-21258382)
chr1 (210-265)||(13085089-13085144)
chr1 (255-336)||(4684518-4684599)
chr1 (313-357)||(13085032-13085076)
chr1 (362-438)||(29694020-29694095)
chr1 (292-352)||(49401987-49402047)
chr1 (499-556)||(8360100-8360157)
chr1 (303-355)||(34475804-34475856)
chr1 (476-520)||(36816970-36817014)
chr1 (294-356)||(44958464-44958524)
chr1 (467-557)||(38041121-38041211)
chr1 (237-302)||(33077719-33077784)
chr1 (464-497)||(37919766-37919799)
chr1 (477-558)||(41515212-41515293)
chr1 (177-209)||(13085134-13085166)
chr1 (189-327)||(47996661-47996800)
[»] chr6 (13 HSPs)
chr6 (182-354)||(32871711-32871884)
chr6 (191-356)||(34713487-34713652)
chr6 (177-355)||(6784660-6784838)
chr6 (177-333)||(2130472-2130628)
chr6 (177-337)||(28867157-28867317)
chr6 (241-355)||(3855694-3855807)
chr6 (198-302)||(6519233-6519337)
chr6 (176-327)||(11301807-11301958)
chr6 (364-454)||(24624901-24624991)
chr6 (390-494)||(9863526-9863629)
chr6 (447-518)||(9863432-9863502)
chr6 (451-520)||(9875776-9875844)
chr6 (417-461)||(9875774-9875818)
[»] chr8 (15 HSPs)
chr8 (177-355)||(38585046-38585224)
chr8 (193-358)||(29414370-29414535)
chr8 (177-353)||(5718407-5718591)
chr8 (235-353)||(25124400-25124518)
chr8 (364-492)||(31271803-31271931)
chr8 (197-354)||(33543341-33543494)
chr8 (225-327)||(5686276-5686378)
chr8 (177-353)||(24068076-24068252)
chr8 (177-309)||(36947229-36947363)
chr8 (177-247)||(29543678-29543748)
chr8 (210-319)||(26415557-26415666)
chr8 (177-288)||(35393712-35393823)
chr8 (210-356)||(43063809-43063955)
chr8 (477-545)||(27459879-27459947)
chr8 (365-402)||(36933377-36933414)
[»] chr3 (24 HSPs)
chr3 (182-355)||(1632786-1632958)
chr3 (210-339)||(26442954-26443083)
chr3 (210-352)||(18271924-18272066)
chr3 (177-356)||(45852891-45853070)
chr3 (181-357)||(10593417-10593592)
chr3 (364-556)||(44798649-44798841)
chr3 (177-356)||(34905818-34905997)
chr3 (213-358)||(1713933-1714078)
chr3 (364-494)||(39926443-39926572)
chr3 (197-344)||(2671895-2672042)
chr3 (219-356)||(31192073-31192210)
chr3 (177-318)||(48897675-48897816)
chr3 (190-329)||(40840633-40840771)
chr3 (446-520)||(8004285-8004359)
chr3 (477-558)||(15042961-15043042)
chr3 (364-464)||(22754718-22754811)
chr3 (490-557)||(22754818-22754886)
chr3 (466-550)||(39926355-39926439)
chr3 (364-406)||(8004364-8004406)
chr3 (447-556)||(46181042-46181149)
chr3 (512-557)||(19234352-19234397)
chr3 (451-500)||(45004435-45004483)
chr3 (512-544)||(44798862-44798894)
chr3 (413-461)||(45004441-45004489)
[»] chr7 (23 HSPs)
chr7 (367-558)||(34328560-34328749)
chr7 (182-355)||(23611708-23611880)
chr7 (210-356)||(46413700-46413849)
chr7 (177-323)||(21882759-21882905)
chr7 (182-355)||(20125567-20125740)
chr7 (177-334)||(22631452-22631609)
chr7 (182-303)||(46297590-46297711)
chr7 (177-356)||(8123663-8123842)
chr7 (222-327)||(1985023-1985128)
chr7 (382-515)||(11561368-11561500)
chr7 (381-520)||(9384608-9384746)
chr7 (364-494)||(43466693-43466823)
chr7 (182-355)||(19511387-19511560)
chr7 (171-311)||(23730507-23730645)
chr7 (193-356)||(24250417-24250574)
chr7 (193-314)||(44600996-44601109)
chr7 (447-556)||(2377156-2377264)
chr7 (476-550)||(47664519-47664593)
chr7 (476-520)||(31589463-31589507)
chr7 (475-556)||(5899218-5899299)
chr7 (299-339)||(15127564-15127604)
chr7 (512-556)||(21066364-21066408)
chr7 (446-494)||(23284773-23284820)
[»] chr4 (29 HSPs)
chr4 (171-352)||(42504155-42504333)
chr4 (177-354)||(37762777-37762956)
chr4 (190-355)||(5288507-5288672)
chr4 (177-323)||(24060548-24060694)
chr4 (177-296)||(19482490-19482609)
chr4 (232-344)||(30220727-30220838)
chr4 (182-304)||(41545392-41545514)
chr4 (189-297)||(25817649-25817757)
chr4 (210-314)||(29065277-29065381)
chr4 (177-355)||(16528535-16528716)
chr4 (363-461)||(46844623-46844721)
chr4 (180-312)||(51304300-51304431)
chr4 (366-495)||(5314312-5314441)
chr4 (260-356)||(19663341-19663433)
chr4 (291-356)||(19482799-19482864)
chr4 (368-460)||(45682765-45682857)
chr4 (466-545)||(46844572-46844651)
chr4 (291-352)||(19663274-19663335)
chr4 (419-495)||(23811319-23811393)
chr4 (192-344)||(2765339-2765489)
chr4 (184-285)||(41485716-41485817)
chr4 (178-247)||(42108752-42108821)
chr4 (192-247)||(13218442-13218497)
chr4 (447-494)||(20394077-20394123)
chr4 (479-541)||(10011691-10011753)
chr4 (479-541)||(10018832-10018894)
chr4 (470-515)||(10011605-10011650)
chr4 (470-515)||(10018746-10018791)
chr4 (410-494)||(23811277-23811360)
[»] scaffold0194 (1 HSPs)
scaffold0194 (242-359)||(27063-27180)
[»] scaffold0122 (1 HSPs)
scaffold0122 (177-320)||(18606-18749)
[»] scaffold0018 (1 HSPs)
scaffold0018 (179-289)||(69949-70059)
[»] scaffold0011 (2 HSPs)
scaffold0011 (464-556)||(12538-12630)
scaffold0011 (364-422)||(12471-12529)
[»] scaffold0247 (1 HSPs)
scaffold0247 (235-354)||(19220-19339)
[»] scaffold0260 (1 HSPs)
scaffold0260 (476-520)||(20513-20557)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 3040553 - 3040208
Alignment:
Q  17 caaaacgtattacgagagaaaaacatcacaaaacagttacaaagtcacttgtgccgaaaataggcaagcattgccnnnnnnnnnnnnnnnnnntagatga 116  Q
    |||||| |||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||                  |||||||    
T  3040553 caaaacatattacgagagaaacac--cacaaaacagttacaaagtcacctgtgccgaaaataggcaagcattgccaaaaaataagaaaaaaa-tagatga 3040457  T
Q  117 tagagaccgttacaatgaatttacttttaactccatccacataagcatatcactatgaagattgttatttacctagagagtttttatcaagaatttatca 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3040456 tagagaccgttacaatgaatttacttttaactccatccacttaagcatatcactatgagcattgttatttacctagagagtttttatcaagaatttatca 3040357  T
Q  217 agaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaa 316  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  3040356 agaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaa 3040257  T
Q  317 ttttcttgataaattttgtcactgtatctattatttccctatcactatt 365  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3040256 ttttcttgataaattttgtcactgtgtctattatttccctatcactatt 3040208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 408 - 657
Target Start/End: Complemental strand, 3040114 - 3039865
Alignment:
Q  408 cgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgg 507  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||  ||||| |||||||      
T  3040114 cgctgcgcaactcaactcacgctgaaattaaatcttgtgtgagttaactcacgatgggaattaacacttgcgtgagttaaatc--gcatggatattttaa 3040017  T
Q  508 gaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattctacaaattgggtacca--tcctatgatagagaccaagatccattaccaccc 605  Q
     ||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  3040016 aaagttcagttgaacgcgaacaaaatgtgttggaagaatagcataattctacaaattgggtaccacatcctatgatagagaccaagatccattaccaccc 3039917  T
Q  606 cgtagcatcctagctagtattgcccttgcacaaccctgacatccgagataac 657  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  3039916 cgtagcatcctagctagtatcgcccttgcacaaccctggcatccgagataac 3039865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 177 - 352
Target Start/End: Complemental strand, 30735457 - 30735282
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||     
T  30735457 attgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatgctgg 30735358  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  30735357 gtaattaagaaaaagtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtacctatcattt 30735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 177 - 352
Target Start/End: Original strand, 25493791 - 25493966
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| | || | |||||||| ||||||||||||||    
T  25493791 attgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgt 25493890  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    ||||||||||||| || ||| |||||| |||||||||||||||||| |||| || |||||||||||||||| ||||    
T  25493891 gtaattaaggaaatgtattaacaaatatactgtcttgaaattttctggatacatgttgtcactgtatctatcattt 25493966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 193 - 355
Target Start/End: Complemental strand, 30700990 - 30700828
Alignment:
Q  193 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagt 292  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| || || |||| ||||||||||||| |||||||||||| ||| ||    
T  30700990 agagtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaattaagaaaaggt 30700891  T
Q  293 gttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| | |||| |||||||    
T  30700890 gttagcaaatacactgtcttaaaatttttttgataaattttgtcactgcacctatcatttccc 30700828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 177 - 355
Target Start/End: Original strand, 40519151 - 40519328
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||| ||  |||||||| ||||||||||| |||    
T  40519151 attgctatttatctagagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatca-gggaggtaatgatgt 40519249  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    ||||||||| |||| | || |||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||    
T  40519250 gtaattaagaaaaaatattggcaaatacactgtcttaaaattttcttgataatttttgtcactgtatttatcatttccc 40519328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 177 - 355
Target Start/End: Original strand, 30071743 - 30071921
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||| |||||||||||| |||||||| |||||||| ||||||| ||||||||||| |||| ||  |||||||| || ||||| ||||||    
T  30071743 attgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagtggtgt 30071842  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||||| |||||| | ||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||| |||||||    
T  30071843 gtaattgaggaaaggagttagcaaatacattgtcttaaaattttcttcataaattttgtcactctatctatcatttccc 30071921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 556
Target Start/End: Original strand, 2190282 - 2190474
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctg 463  Q
    ||||||||  ||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  ||||| | |||||||||||||||    
T  2190282 ttagttaaacaactcaagttttaaaatctgtgcatcttaacatgcgctgcacaacttaactcacgctggaattaacgcttgtgtaagttaactcacgctg 2190381  T
Q  464 ggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    | |||||||| || | |||||||||||||||| |  |||||||  |||| ||||||| | ||| |||||| ||||| |||||||||| |||||    
T  2190382 gaaattaacacttacatgagttaactcacgcaagggtattttgaaaagtacagttgggcgcgagcaaaatatgttgcgagaatagcataattc 2190474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 190 - 355
Target Start/End: Original strand, 20359896 - 20360063
Alignment:
Q  190 tagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgtta--tctggcggaaatcaagggaggtaatggtgtgtaattaagga 287  Q
    ||||||| |||||||||||||| ||||||||||||||||  |||||||||| |||||  | |  | |||||||| |||| ||||||||||||||||| ||    
T  20359896 tagagagattttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaaga 20359995  T
Q  288 aaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    || ||||||||||||| || ||||||||| |||||||||| | ||||||||| ||||||| |||||||    
T  20359996 aaggtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccc 20360063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 225 - 355
Target Start/End: Complemental strand, 34280194 - 34280064
Alignment:
Q  225 tctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttg 324  Q
    ||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||||||||||  ||||| ||||||||||| ||| |||| || |||    
T  34280194 tctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaaatattattg 34280095  T
Q  325 ataaattttgtcactgtatctattatttccc 355  Q
    ||||||| ||||||||||||||| |||||||    
T  34280094 ataaattctgtcactgtatctatcatttccc 34280064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 461
Target Start/End: Original strand, 17066797 - 17066894
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgc 461  Q
    |||||||| |||||||||||||||||||| ||||||||| |||  ||||| ||||||||||||||||||||||||  |||| ||||||||||||||||    
T  17066797 ttagttaattaacgcaagtgttaaaatctacgcatcttagcatctgctgcacaacttaactcacgctggaattaacacttgcatgagttaactcacgc 17066894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 197 - 356
Target Start/End: Original strand, 24402035 - 24402196
Alignment:
Q  197 tttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctgg-cggaaat-caagggaggtaatggtgtgtaattaaggaaaagtgt 294  Q
    ||||||||||||||||||||||||||  |||||| ||| |||||||||||| ||| ||||||| ||| ||| | |||| ||||||||||||||||| |||    
T  24402035 tttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttggtcggaaatacaaagga-gcaatgatgtgtaattaaggaaaactgt 24402133  T
Q  295 tagcaaatacactgt--cttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    || | |||||| |||   || |||||||||||||||||||||||| ||||||||| ||||||||    
T  24402134 taac-aatacaatgtactttaaaattttcttgataaattttgtcattgtatctatcatttccct 24402196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 381 - 495
Target Start/End: Original strand, 20419480 - 20419594
Alignment:
Q  381 gtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctgg-aattaaatcttgtatgagttaactcacgctgggaattaacatttgcg 479  Q
    ||||||||||||||||  ||||||||||| || ||||||||||||||| ||| ||||||  ||||  |||||||||||||||| |||||||||| |||||    
T  20419480 gtgttaaaatctgcgctacttaacatgcgttgggcaacttaactcacgttggaaattaacacttgcgtgagttaactcacgct-ggaattaacacttgcg 20419578  T
Q  480 tgagttaactcacgca 495  Q
    ||||||||||||||||    
T  20419579 tgagttaactcacgca 20419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 556
Target Start/End: Original strand, 17066852 - 17066956
Alignment:
Q  451 ttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagca 550  Q
    |||||||||||||| |||||||| |||| |||||||||||||||| |  |||||| | |||||||||||||  ||| | |||||||||| ||||| || |    
T  17066852 ttaactcacgctgg-aattaacacttgcatgagttaactcacgcaggggtattttagaaagttcagttggatgcgagcgaaatgtgttgcgagaagagaa 17066950  T
Q  551 gaattc 556  Q
    ||||||    
T  17066951 gaattc 17066956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 7547291 - 7547366
Alignment:
Q  230 atcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacac 306  Q
    |||||| ||||||||||| || |||||||||||| || ||||| | |||||||||||||| ||||||||||||||||    
T  7547291 atcaatcaaatttgttatttgacggaaatcaagg-agataatgatttgtaattaaggaaatgtgttagcaaatacac 7547366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 21259195 - 21259301
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctgg-cggaaatcaagggaggtaatggtgtgtaa 280  Q
    |||||| ||||||||||||||||||||||| || ||||||| || | |   ||||||||||  |  |||| |||||||||||||||||||||| ||||||    
T  21259195 tatttatctagagagtttttatcaagaattgataaagaaaaggtttaagctaattaaatttcatg-ctggacggaaatcaagggaggtaatgg-gtgtaa 21259292  T
Q  281 ttaaggaaa 289  Q
    |||||||||    
T  21259293 ttaaggaaa 21259301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 20419474 - 20419397
Alignment:
Q  480 tgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattcta 558  Q
    |||||||||||||  ||||||||||| |  | ||||||||||| | | |||||||| ||||||||||||||||||||||    
T  20419474 tgagttaactcacatatgaatattttcgatatttcagttggac-caagcaaaatgtattgggagaatagcagaattcta 20419397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 9666951 - 9666899
Alignment:
Q  278 taattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaat 330  Q
    |||||| ||||| ||||||||||||||||  |||| |||||||||||||||||    
T  9666951 taattatggaaaggtgttagcaaatacaccatcttaaaattttcttgataaat 9666899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 25994958 - 25994911
Alignment:
Q  446 atgagttaactcacgctgggaattaacatttgcgtgagttaactcacgc 494  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  25994958 atgagttaactcacgc-gagaattaacacttgcgtgagttaactcacgc 25994911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 3040152 - 3040196
Alignment:
Q  512 ttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    ||||||||||  ||| |||||||||||||||||| ||||||||||    
T  3040152 ttcagttggaggcgagcaaaatgtgttgggagaagagcagaattc 3040196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 20142940 - 20143119
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| |||||||| |||    
T  20142940 attgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgt 20143039  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20143040 gtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttccct 20143119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 177 - 347
Target Start/End: Complemental strand, 13716846 - 13716676
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||| ||||||| ||||||||| ||||    
T  13716846 attgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgt 13716747  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctat 347  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13716746 gtaattaagaaaaggtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtatctat 13716676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 177 - 352
Target Start/End: Complemental strand, 19945860 - 19945685
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| ||||||  |||||||||||||| |||||||||| || ||||||||||  ||||||||||||||||| || ||||||| |||||||||||||||||    
T  19945860 attgctatttatttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatggtgt 19945761  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    |||||||||||||  | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  19945760 gtaattaaggaaagatattaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatcattt 19945685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 210 - 347
Target Start/End: Original strand, 27007174 - 27007311
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    |||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  27007174 tttatcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgt 27007273  T
Q  310 cttgaaattttcttgataaattttgtcactgtatctat 347  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  27007274 cttaaaattttcttgataaattttgtcactgtatctat 27007311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 14131161 - 14131307
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    ||||||||||||||||||  | ||||||||| |||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |    
T  14131161 tttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtgttagcaaatacactat 14131260  T
Q  310 cttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  14131261 cttaaaattttcttcataaattttgtcactgtatctatcatttccct 14131307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 38320333 - 38320153
Alignment:
Q  180 gttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgta 279  Q
    |||||||| ||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||| ||| ||||||||| |||||||||| ||||||    
T  38320333 gttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgta 38320234  T
Q  280 attaaggaaaagtgttagcaaatacactgtcttgaaa-------ttttcttgataaattttgtcactgtatctattatttc 353  Q
    | |||||||| |||||| ||||||||||||||| |||       |||||||||||||||||| |||||||||||| |||||    
T  38320233 aataaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 38320153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 32976153 - 32975977
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggt--aatggtgtgta 279  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||||| | ||||  |||||| ||||    
T  32976153 tatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaatggtatgta 32976054  T
Q  280 attaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||||| || |||||  ||||||||| ||||||||    
T  32976053 attaagaaaaggtgttagtaaatacactgttttgaaattttcttgatacatattgtcgatgtatctatcatttccct 32975977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 494
Target Start/End: Complemental strand, 24582628 - 24582502
Alignment:
Q  368 ttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaa 467  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||  |||||||||||||||||||||    
T  24582628 ttaagtaatgcatgtgttaaaatctgcgcatcttaacatgcgatgcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgctgggaa 24582529  T
Q  468 ttaacatttgcgtgagttaactcacgc 494  Q
    |||||| ||| ||||||||||||||||    
T  24582528 ttaacacttgagtgagttaactcacgc 24582502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 37714395 - 37714538
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||||||||||||||||  |||||||||||||| || |||| |||||||||||||||| ||  ||||||||| |||| |||||||||    
T  37714395 attgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgt 37714494  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaatttt 320  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||    
T  37714495 gtaattaaggaaaggtgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 193 - 323
Target Start/End: Original strand, 35457389 - 35457518
Alignment:
Q  193 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagt 292  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||| ||    
T  35457389 agagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgt 35457487  T
Q  293 gttagcaaatacactgtcttgaaattttctt 323  Q
    |||| |||||| ||| |||| ||||||||||    
T  35457488 gttaacaaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 3167886 - 3168046
Alignment:
Q  195 agtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgt 294  Q
    ||||||||| |||||||| | ||||||| ||||||| ||||||||||| |||| || |||||||||| | |||||||| ||||||||||| |||| ||||    
T  3167886 agtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggtgt 3167985  T
Q  295 tagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||||||||| ||| | |  |||||||||||||||||||||||||| ||||||| ||||||||    
T  3167986 tagcaaatatactatttaaaaattttcttgataaattttgtcact-tatctatcatttccct 3168046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 180 - 336
Target Start/End: Complemental strand, 31645231 - 31645074
Alignment:
Q  180 gttatttacctagagagtttttatcaagaatttatc-aagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgt 278  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||||| || ||||||||||| | || ||||||||||||||  | |||||| |||||    
T  31645231 gttatttatctagagagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgt 31645132  T
Q  279 aattaaggaaa-agtgttagcaaatacactgtcttgaaattttcttgataaattttgtc 336  Q
    ||||||| |||  ||||||||||||||| | |||| |||||||| ||||||||||||||    
T  31645131 aattaagaaaagggtgttagcaaatacattctcttaaaattttc-tgataaattttgtc 31645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 191 - 343
Target Start/End: Original strand, 4434283 - 4434438
Alignment:
Q  191 agagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggag---gtaatggtgtgtaattaagga 287  Q
    |||||| |||||| ||||||| |||||||||| ||| || ||||||||||||||||| || || ||||||||||||   ||||||||||||||||||| |    
T  4434283 agagagattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgtaattaagta 4434382  T
Q  288 aaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtat 343  Q
    || ||||| ||||||| | ||| ||||||||||||| ||| | |||||||||||||    
T  4434383 aatgtgttggcaaatatattgttttgaaattttcttaatacagtttgtcactgtat 4434438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 37899639 - 37899471
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||| || |||| ||||||||||||| || || || ||||||| ||||              
T  37899639 attgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggag---------- 37899550  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    ||||||| ||||| ||||||| ||||||| |||||  ||| |||||||||| ||||||||||||||||||| |||||||    
T  37899549 gtaattatggaaatgtgttagtaaatacattgtctaaaaaatttcttgatacattttgtcactgtatctatcatttccc 37899471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 189 - 355
Target Start/End: Original strand, 27407406 - 27407571
Alignment:
Q  189 ctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaa 288  Q
    ||||||||| ||||||||||||| ||||||||||  | |||  |||||||||||||||| |  |||||||||||| || ||||| |||||||||||||||    
T  27407406 ctagagagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaa 27407505  T
Q  289 aagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    | || |||||||||||| | |||| ||||||| ||  |  | ||||||||||||||||| |||||||    
T  27407506 atgtattagcaaatacagtatcttaaaattttgtt-cttgagtttgtcactgtatctatcatttccc 27407571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  274 tgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||||||||| |||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 31845461 - 31845544
Alignment:
Q  252 cggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgt 335  Q
    ||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||  |||||||||||||||| |||||    
T  31845461 cggaaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttcttgataaaatttgt 31845544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 24183943 - 24184047
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||||| ||||  ||||||||||||||  | ||||||||||||||| || |||  ||||||||||| |||| || ||||| ||||  |||||||||||||    
T  24183943 attgttgtttatttagagagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatggtgt 24184042  T
Q  277 gtaat 281  Q
    |||||    
T  24184043 gtaat 24184047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 24582465 - 24582389
Alignment:
Q  480 tgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    ||||||||||||||||  |||||||||| ||||| ||||| || | | |||||||||||||||||| ||||||||||    
T  24582465 tgagttaactcacgcagtaatattttggaaagtttagttgaacgcaagcaaaatgtgttgggagaagagcagaattc 24582389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 24582545 - 24582470
Alignment:
Q  419 ttaactcacgctgg-aattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaactcacgc 494  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  24582545 ttaactcacgctgggaattaacacttgagtgagttaactcacgctgg-aattaacacttgcgtgagttaagtcacgc 24582470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 5881505 - 5881435
Alignment:
Q  239 atttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    ||||||||| |  |||||||||||| | |||||| |||||||||||||||| || |||||||||| |||||    
T  5881505 atttgttatttaccggaaatcaaggaatgtaatgatgtgtaattaaggaaaggtattagcaaatatactgt 5881435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 34233611 - 34233648
Alignment:
Q  476 tgcgtgagttaactcacgcatgaatattttgggaagtt 513  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  34233611 tgcgtgagttaactcacgcatgagtattttgggaagtt 34233648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 556
Target Start/End: Original strand, 25770376 - 25770464
Alignment:
Q  468 ttaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    |||||| | ||||||||||||||||||||||  |||||  ||| |||||||| | | || ||||||||||||||  || ||||||||||    
T  25770376 ttaacactagcgtgagttaactcacgcatgagcatttttagaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcagaattc 25770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 177 - 358
Target Start/End: Original strand, 35412998 - 35413179
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||||| ||||    
T  35412998 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgt 35413097  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccctat 358  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  35413098 gtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttccctat 35413179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 178 - 336
Target Start/End: Original strand, 10061565 - 10061723
Alignment:
Q  178 ttgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtg 277  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| || | ||||||||||||||||||| ||||    
T  10061565 ttgttatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtg 10061664  T
Q  278 taattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtc 336  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  10061665 taattaaggaaatgtgttagcaaataaactgtcttgaaattttcttgataaattttgtc 10061723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 182 - 357
Target Start/End: Original strand, 29657341 - 29657516
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| |||||||| ||||||||| ||||  ||||||||| ||||||| |||||||||||||||| || || ||||||| |||||||||| | ||||||    
T  29657341 tatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaat 29657440  T
Q  282 taaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttcccta 357  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  29657441 taaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttcccta 29657516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 181 - 357
Target Start/End: Complemental strand, 35149796 - 35149620
Alignment:
Q  181 ttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaa 280  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| || |  |||||||||||| ||||| ||| |||    
T  35149796 ttatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataa 35149697  T
Q  281 ttaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttcccta 357  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||||| |||| |||| ||||    
T  35149696 ttaaggaaaggtgttagcaaatacattctcttgaaatttttttgataaattttgtcactgtacctatcattttccta 35149620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 177 - 324
Target Start/End: Complemental strand, 43537284 - 43537134
Alignment:
Q  177 attgttatttacctagagagttttt---atcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatgg 273  Q
    ||||||||||| |||||||||||||   |||||||||| |||||||||| ||||||  |||||||||||||||| || ||||||||||||||||||||||    
T  43537284 attgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatgg 43537185  T
Q  274 tgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttg 324  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  43537184 tgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttcttg 43537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 26469928 - 26470082
Alignment:
Q  189 ctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaa 288  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||| |   | ||||||| | || |||||||||||||||||||||    
T  26469928 ctagagagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaa 26470027  T
Q  289 aagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtat 343  Q
    | ||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  26470028 aggtgttagcaaatacactgttttaaaattttcttgataaattttatcactgtat 26470082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 21540046 - 21540187
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| ||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||| ||||||| |||||  ||    
T  21540046 attgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagt 21540145  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaatt 318  Q
    |||||||| |||| |||||| |||||||||||||||||||||    
T  21540146 gtaattaaagaaaggtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 48852615 - 48852794
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||| | |   ||||||| | || ||||| |||    
T  48852615 attgttatttatctagagagtttttattaagaatttatcaaaaaaatgttttaatcaattaaatttgttatttagaaaaaatcaaagaagataatgatgt 48852714  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
     |||||||| |||| ||||| |||||||| ||| || ||| ||| ||||||||||||||||||| |||||| ||||||||    
T  48852715 ataattaagaaaaaatgttaacaaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccct 48852794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 23906742 - 23906605
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||| || |||||||||||||| |||||||||| || |||  |||||||||||||||| || |  |||||||| |||||||||||||    
T  23906742 attgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgt 23906643  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttga 314  Q
    |||||||| |||| ||||||||||||||| ||||||||    
T  23906642 gtaattaaagaaaggtgttagcaaatacattgtcttga 23906605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 11469995 - 11470130
Alignment:
Q  177 attgttatttacctagagagttttt-atcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtg 275  Q
    |||||||||||   ||||||||||| || ||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||| ||    
T  11469995 attgttatttattaagagagttttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatg 11470094  T
Q  276 tgtaattaaggaaaagtgttagcaaatacactgtct 311  Q
    |||||||||| |||  |||||  ||||||| |||||    
T  11470095 tgtaattaagaaaatatgttaagaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 382 - 519
Target Start/End: Complemental strand, 19063002 - 19062866
Alignment:
Q  382 tgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtg 481  Q
    ||||||||||||||||||||||||||||||||  || |||||||| |||||||||||  ||||| |||||||||||||||| | |||||||| |||||||    
T  19063002 tgttaaaatctgcgcatcttaacatgcgctgcaaaatttaactcatgctggaattaacacttgtctgagttaactcacgct-gaaattaacacttgcgtg 19062904  T
Q  482 agttaactcacgcatgaatattttgggaagttcagttg 519  Q
    | |||||||| ||| | ||||||| | |||||| ||||    
T  19062903 aattaactcatgcagggatattttagaaagttccgttg 19062866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 411 - 520
Target Start/End: Original strand, 32306405 - 32306513
Alignment:
Q  411 tgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaa 510  Q
    ||||||||||||||||||||| ||||||  ||||  |||||||||||||||| |||||| ||| |||| |||||||||||||||| | ||||||||| ||    
T  32306405 tgcgcaacttaactcacgctgaaattaacacttgcgtgagttaactcacgct-ggaattgacacttgcatgagttaactcacgcagggatattttggaaa 32306503  T
Q  511 gttcagttgg 520  Q
    ||||||||||    
T  32306504 gttcagttgg 32306513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 9113514 - 9113421
Alignment:
Q  260 aagggaggtaatggtgtgtaattaaggaaaagtgttagcaaa-tacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    ||||||||||||| | |||||||||||||| || |||||||| |||||| |||| |||||||||||||| ||||| ||||||||||||| ||||    
T  9113514 aagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttcttgatatattttatcactgtatctatcattt 9113421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 49313595 - 49313663
Alignment:
Q  193 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaa 261  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  | ||||||||||    
T  49313595 agagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatcaa 49313663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 8360229 - 8360166
Alignment:
Q  362 tattagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactc 425  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||    
T  8360229 tattagttaagtaacgcatgtgttaaaatcagcgcatcttaacatgctgtgcgcaacttaactc 8360166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 21258382 - 21258292
Alignment:
Q  429 ctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    ||||||||||  ||||| | |||||||||||||||| |||||||| |||||||||||||||||||||    |||||||||||||||||||||    
T  21258382 ctggaattaacacttgtcttagttaactcacgctgg-aattaacacttgcgtgagttaactcacgcagaggtattttgggaagttcagttgg 21258292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 13085144 - 13085089
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaaggga 265  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||    
T  13085144 tttatcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 4684518 - 4684599
Alignment:
Q  255 aaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtc 336  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||||||   ||| |  |||||||||||||  ||||||||    
T  4684518 aaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaatatgttgtttgaaaattttcttgatgcattttgtc 4684599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 13085076 - 13085032
Alignment:
Q  313 gaaattttcttgataaattttgtcactgtatctattatttcccta 357  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  13085076 gaaattttcttgatacattttgtcattgtatctattatttcccta 13085032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 29694095 - 29694020
Alignment:
Q  362 tattagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaa 438  Q
    ||||||||||||||| || |||| ||||| ||||| |||||||||| ||||| ||||||||||||  ||||||||||    
T  29694095 tattagttaagtaacacaggtgtcaaaatgtgcgc-tcttaacatgtgctgcacaacttaactcatactggaattaa 29694020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 49401987 - 49402047
Alignment:
Q  292 tgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    |||||||||||||| ||  ||||||| || |||||||||||||||||||||||||| ||||    
T  49401987 tgttagcaaatacattggtttgaaatctttttgataaattttgtcactgtatctatcattt 49402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 556
Target Start/End: Complemental strand, 8360157 - 8360100
Alignment:
Q  499 atattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    ||||||| |||||||||||||  | ||| |||||||||||||||||| ||||||||||    
T  8360157 atattttaggaagttcagttgagcgcgagcaaaatgtgttgggagaagagcagaattc 8360100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 34475804 - 34475856
Alignment:
Q  303 acactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||||||||| |||||||||| ||| |||||||||||||||| || |||||||    
T  34475804 acactgtcttaaaattttcttaatacattttgtcactgtatccatcatttccc 34475856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 36817014 - 36816970
Alignment:
Q  476 tgcgtgagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    |||||||||||||||||||  || |||||||||||||||||||||    
T  36817014 tgcgtgagttaactcacgcgggagtattttgggaagttcagttgg 36816970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 44958524 - 44958464
Alignment:
Q  294 ttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    |||||||||||||| |||| |||||||||| ||| ||||||||||  ||||||| ||||||||    
T  44958524 ttagcaaatacactctcttcaaattttcttaatacattttgtcac--tatctatcatttccct 44958464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 557
Target Start/End: Complemental strand, 38041211 - 38041121
Alignment:
Q  467 attaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattct 557  Q
    |||||||  ||||||| |||||||||||||||  |||||   |||||  |||||| | || ||||| |||||||||||| |||||||||||    
T  38041211 attaacacatgcgtgaattaactcacgcatgagcattttcaaaagtttggttggaaatgagcaaaacgtgttgggagaagagcagaattct 38041121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 33077719 - 33077784
Alignment:
Q  237 aaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaat 302  Q
    ||||||| ||| || || |||||||| ||||||||| |||||||||||  ||| ||||||||||||    
T  33077719 aaatttgatatttgccgaaaatcaagagaggtaatgatgtgtaattaaataaatgtgttagcaaat 33077784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 497
Target Start/End: Original strand, 37919766 - 37919799
Alignment:
Q  464 ggaattaacatttgcgtgagttaactcacgcatg 497  Q
    ||||||||||| ||||||||||||||||||||||    
T  37919766 ggaattaacatctgcgtgagttaactcacgcatg 37919799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 558
Target Start/End: Original strand, 41515212 - 41515293
Alignment:
Q  477 gcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattcta 558  Q
    ||||||||||||||||||| |  |||||||| |||||  |||||   ||| ||||||||| ||| |||| ||||||||||||    
T  41515212 gcgtgagttaactcacgcacgggtattttggaaagtttggttgggagcgagcaaaatgtgatggaagaagagcagaattcta 41515293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 13085166 - 13085134
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaa 209  Q
    ||||||||||| |||||||||||||||||||||    
T  13085166 attgttatttatctagagagtttttatcaagaa 13085134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 327
Target Start/End: Original strand, 47996661 - 47996800
Alignment:
Q  189 ctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggc-ggaaatcaagggaggtaatggtgtgtaattaagga 287  Q
    ||||||||||||||||   |||| ||| | ||||||| ||| |||||||||||| |||| |||| |||||| ||||||||||||    |||||||||| |    
T  47996661 ctagagagtttttatccgaaattgatccaaaaaatgtttcagtcaattaaatttcttat-tggctggaaattaagggaggtaatcaaatgtaattaagaa 47996759  T
Q  288 aaagtgtt-agcaaatacactgtcttgaaattttcttgata 327  Q
    || ||||| ||||| || ||| ||  ||||||||| |||||    
T  47996760 aaggtgttgagcaattatactctcgagaaattttcgtgata 47996800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 182 - 354
Target Start/End: Complemental strand, 32871884 - 32871711
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| || |||||||||||||||||||| |||||||||    
T  32871884 tatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaat 32871785  T
Q  282 taaggaaaagtgttagcaaatacactgtctt-gaaattttcttgataaattttgtcactgtatctattatttcc 354  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  32871784 taaggaaaaatgttagtaaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 191 - 356
Target Start/End: Original strand, 34713487 - 34713652
Alignment:
Q  191 agagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaa 290  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||     
T  34713487 agagagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaag 34713586  T
Q  291 gtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  34713587 gtgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttccct 34713652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 6784838 - 6784660
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||||||||||||| |||||||||| ||||  |||||  |||||||||||||||| || ||||||||||||||| |||||||||    
T  6784838 attgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgt 6784739  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    ||||||||| ||| ||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||| |||||||    
T  6784738 gtaattaagaaaaggtgttagcaaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttccc 6784660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 177 - 333
Target Start/End: Complemental strand, 2130628 - 2130472
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| |||||||||||| || || |||||||||||||||  |||||| |||||||||||||||| ||||||||||||| |||||| || ||||    
T  2130628 attgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgt 2130529  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaatttt 333  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  2130528 gtaattaaggaaaggtgttagcaaatacaccgttttgaaattttcttgataaatttt 2130472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 28867157 - 28867317
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| ||| |||| |||||||||||||| || ||||||| || ||||||||||||||||||||| ||  ||||||||| ||||||||| || |    
T  28867157 attgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaatagtat 28867256  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtca 337  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||||| | |||||||    
T  28867257 gtaattaaggaaatgttttagcaaatacattgtcttgaaattttcttgatacaatttgtca 28867317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 3855807 - 3855694
Alignment:
Q  241 ttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactg 340  Q
    ||||||| || ||||||| |||||| |||||  |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3855807 ttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtgttagcaa-tacactgtcttgaaattttcttgataaattttgtcactg 3855709  T
Q  341 tatctattatttccc 355  Q
    ||||||| |||||||    
T  3855708 tatctatcatttccc 3855694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 6519233 - 6519337
Alignment:
Q  198 ttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttag 297  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||| || || ||||||| ||| |||||| |||||||||||| ||| | |||||    
T  6519233 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagttag 6519332  T
Q  298 caaat 302  Q
    |||||    
T  6519333 caaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 11301807 - 11301958
Alignment:
Q  176 gattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtg 275  Q
    ||||| ||||||  |||||| ||||||||||||||| |||| ||||| |||||| |||||| |||||||||| |  || ||||||||  ||||||| ||     
T  11301807 gattgctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaatagta 11301906  T
Q  276 tgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgata 327  Q
    | ||||||||||||  |||||| ||||||||| | || ||||||||||||||    
T  11301907 tataattaaggaaagatgttaggaaatacactattttaaaattttcttgata 11301958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 364 - 454
Target Start/End: Complemental strand, 24624991 - 24624901
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaa 454  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||| | |||||||||  ||||| ||||||||    
T  24624991 ttagttaagtaacacaagtgttaaaatctgcgcatcttaatatgcgctgcgaaacttaaatcatgttggaattaacacttgtgtgagttaa 24624901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 390 - 494
Target Start/End: Complemental strand, 9863629 - 9863526
Alignment:
Q  390 tctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaact 489  Q
    ||||||||| |||||||| | ||||||||||| ||||| ||||||||||  ||||  | ||||||||||| || |||||||||| ||||||||||||| |    
T  9863629 tctgcgcattttaacatgtgttgcgcaacttacctcacactggaattaacacttgcctaagttaactcacact-ggaattaacacttgcgtgagttaaat 9863531  T
Q  490 cacgc 494  Q
    |||||    
T  9863530 cacgc 9863526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 9863502 - 9863432
Alignment:
Q  447 tgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagtt 518  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||||||||| |  |||||||  ||||||||||    
T  9863502 tgagttaactgacgctgg-aattaacacttgtgtgagttaactcacgcaggggtattttgaaaagttcagtt 9863432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 9875776 - 9875844
Alignment:
Q  451 ttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    |||||||| ||||||| ||||    
T  9875776 ttaactcacgctgg-aattaacacttgcctgagttaactcacgcagaggtattttggaaagttcaattgg 9875844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 9875774 - 9875818
Alignment:
Q  417 acttaactcacgctggaattaaatcttgtatgagttaactcacgc 461  Q
    ||||||||||||||||||||||  ||||  |||||||||||||||    
T  9875774 acttaactcacgctggaattaacacttgcctgagttaactcacgc 9875818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 5e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 38585224 - 38585046
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||| ||||||||| ||||    
T  38585224 attgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgt 38585125  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||||||| |||||||||||||||||||| ||  ||||||||||||||||||||||||||| || |||||| |||||||    
T  38585124 gtaattaaagaaaagtgttagcaaatacattgctttgaaattttcttgataaattttgtcattggatctatcatttccc 38585046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 193 - 358
Target Start/End: Original strand, 29414370 - 29414535
Alignment:
Q  193 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagt 292  Q
    |||||||||||||| |||| |||||||||||||||||  |||||||||||||||| || || ||||||||| |||||||||||| |||||||||||| ||    
T  29414370 agagtttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaattaaggaaaggt 29414469  T
Q  293 gttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccctat 358  Q
    |||| ||||| |||||| ||||||||||||||||| ||||| |||  |||||||| ||||||||||    
T  29414470 gttaacaaatgcactgttttgaaattttcttgatatattttatcaaggtatctatcatttccctat 29414535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 177 - 353
Target Start/End: Complemental strand, 5718591 - 5718407
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaa--------tcaattaaatttgttatctggcggaaatcaagggaggt 268  Q
    |||| |||||| || ||||| |||||||||||||| |||||||||| ||||||         |||||||||||| |||| || |||||||||||| ||||    
T  5718591 attggtatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaaggaaggt 5718492  T
Q  269 aatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttc 353  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||| |||||    
T  5718491 aatggtgtgtaattaaggaaatgtgttagcaaatacactgtcttaaaattttcttgatatagtttgtcattgtatctatcatttc 5718407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 25124400 - 25124518
Alignment:
Q  235 ttaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttg 334  Q
    ||||| ||||||| |||||||||||||| ||| ||||| |||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttg 25124499  T
Q  335 tcactgtatctattatttc 353  Q
    ||||||||||||| |||||    
T  25124500 tcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 364 - 492
Target Start/End: Original strand, 31271803 - 31271931
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctg 463  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||| ||||||||||||| ||||    
T  31271803 ttagttaagtaacgcaaatgttaaaatctgtgcatcttaacatgcactgcgcaacttaactcacgctggaattaagacttgcatgagttaactcatgctg 31271902  T
Q  464 ggaattaacatttgcgtgagttaactcac 492  Q
      ||||| || ||| |||| |||||||||    
T  31271903 aaaattagcacttgtgtgacttaactcac 31271931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 197 - 354
Target Start/End: Original strand, 33543341 - 33543494
Alignment:
Q  197 tttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgtta 296  Q
    |||||||||| ||||||| || |||||||||||| |||| ||||||||||| |||| ||||||||||||| ||||| |||||||||||  ||| ||||||    
T  33543341 tttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggagataatg-tgtgtaattaaaaaaaggtgtta 33543438  T
Q  297 gcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttcc 354  Q
     |||||| |||||||||| ||||||||||||||||||||||  |||||||| ||||||    
T  33543439 acaaatatactgtcttgatattttcttgataaattttgtca--gtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 5686378 - 5686276
Alignment:
Q  225 tctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttg 324  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||  | ||||||||| |||| |||||||||||||| || ||||||||||||||||    
T  5686378 tctcaatcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttcttg 5686279  T
Q  325 ata 327  Q
    |||    
T  5686278 ata 5686276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 177 - 353
Target Start/End: Complemental strand, 24068252 - 24068076
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||| |||||||||||||| ||| |||||| ||||||  |||||||||||||||| | ||  ||||||| |||||| |||||||    
T  24068252 attgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttat-ttgccaaaatcaaaggaggtgatggtgt 24068154  T
Q  277 gtaattaaggaaaagtgttagcaaataca-ctgtcttgaaattttcttgataaattttgtcactgtatctattatttc 353  Q
    |||||||||||||  |||||| |||||||   ||||| | |||||||| ||| | ||||||||||||||||| |||||    
T  24068153 gtaattaaggaaagatgttaggaaatacagaagtcttaacattttcttaatacagtttgtcactgtatctatcatttc 24068076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 36947363 - 36947229
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaa--tgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggt 274  Q
    ||||||||||| |||||||| |||||||||||||| || || ||||  ||| |||||||||||||||||||||  | |  |||| ||||||||||||| |    
T  36947363 attgttatttatctagagagattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggtaatgat 36947264  T
Q  275 gtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    || ||||||| |||| ||||||  |||||||||||    
T  36947263 gtataattaaagaaatgtgttaataaatacactgt 36947229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 29543748 - 29543678
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttat 247  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  29543748 attgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttat 29543678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 26415557 - 26415666
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    ||||||||||||| ||||||| ||||||||||| |||| || ||||||| ||  ||| ||||| |||||||||||||||| || |||||||||| ||| |    
T  26415557 tttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactat 26415656  T
Q  310 cttgaaattt 319  Q
    ||| ||||||    
T  26415657 cttaaaattt 26415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 35393712 - 35393823
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||  || | |  ||||| |||||  |||    || ||||||||||||||||||| ||    
T  35393712 attgctatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggggt 35393811  T
Q  277 gtaattaaggaa 288  Q
    ||||||||||||    
T  35393812 gtaattaaggaa 35393823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 43063955 - 43063809
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    |||||||| |||| |||||| |||||||||||| |||| ||  | |||||||   |||||||| ||| |||||||  |||  | ||| |||||||| | |    
T  43063955 tttatcaaaaaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaaaaaaagatattaacaaatacattat 43063856  T
Q  310 cttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||  |||||||||| ||| ||||||||  ||||||||| ||||||||    
T  43063855 ctcaaaattttcttaatacattttgtcgatgtatctatcatttccct 43063809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 545
Target Start/End: Original strand, 27459879 - 27459947
Alignment:
Q  477 gcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaa 545  Q
    |||||||||||||||  ||||  ||||||||||| ||||| ||||  ||| ||||||||||||||||||    
T  27459879 gcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaa 27459947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 36933414 - 36933377
Alignment:
Q  365 tagttaagtaacgcaagtgttaaaatctgcgcatctta 402  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  36933414 tagttaactaacgcaagtgttaaaatctgcgcaactta 36933377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 182 - 355
Target Start/End: Original strand, 1632786 - 1632958
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| ||||||| |||||||||| |||| ||||||||||||||||||  ||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  1632786 tatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaat 1632884  T
Q  282 taaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    ||| |||| |||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  1632885 taaagaaacgtgttaacaaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttccc 1632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 26442954 - 26443083
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgt 26443053  T
Q  310 cttgaaattttcttgataaattttgtcact 339  Q
    ||||||||||||||||||||||||||||||    
T  26443054 cttgaaattttcttgataaattttgtcact 26443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 18272066 - 18271924
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| || |    
T  18272066 tttatcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctat 18271967  T
Q  310 cttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    ||| |||||||||||||||||||||||||| ||||||| ||||    
T  18271966 cttaaaattttcttgataaattttgtcactatatctatcattt 18271924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 45853070 - 45852891
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| ||| |||| |||||||||||||| |||||||||| ||||||| ||||||||||| |||| ||   | ||||||||||| ||||| | |    
T  45853070 attgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatgatat 45852971  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||||||||| ||| |||||||||||||||| ||||| |||||||||||||| | ||||||||| ||||||| ||||||||    
T  45852970 gtaattaagaaaaggtgttagcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttccct 45852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 181 - 357
Target Start/End: Complemental strand, 10593592 - 10593417
Alignment:
Q  181 ttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaa 280  Q
    |||||||  ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||  |||||  |  ||||||||| |||    
T  10593592 ttatttatttagagagattttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttatttagcggat-tcaagaaaactaatggtgtataa 10593494  T
Q  281 ttaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttcccta 357  Q
    ||| | ||| |||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||  ||||||||    
T  10593493 ttaggaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttatcactgtatctatcttttcccta 10593417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 364 - 556
Target Start/End: Complemental strand, 44798841 - 44798649
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctg 463  Q
    |||||||||||| ||| ||||||||||||  ||||||||||||||||||| ||| |||| ||||||||||| |||  ||||  |||||||||||||| ||    
T  44798841 ttagttaagtaatgcatgtgttaaaatctatgcatcttaacatgcgctgcacaatttaattcacgctggaactaacacttgcgtgagttaactcacgttg 44798742  T
Q  464 ggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    ||||||||||  |||||||||||||||||  |    |||||| |||||||||||| | | ||| |||||||||||||||||| |||| |||||    
T  44798741 ggaattaacacgtgcgtgagttaactcacttagcggtattttaggaagttcagttaggcgcgagcaaaatgtgttgggagaagagcaaaattc 44798649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 34905818 - 34905997
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||| || |||||||||||||| || ||||||||||||||  || ||||||||||||| || |  ||||||| |||||||||| |||    
T  34905818 attgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgt 34905917  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
     |||||||||||| |||||||||||||||||||||| ||||||||| |||| | |||||   ||||||||| ||||||||    
T  34905918 ataattaaggaaaggtgttagcaaatacactgtcttaaaattttctcgatacagtttgttgttgtatctataatttccct 34905997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 213 - 358
Target Start/End: Complemental strand, 1714078 - 1713933
Alignment:
Q  213 atcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtctt 312  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| ||||||| |||| |||| |||||||| |||  |||||  ||||||||||||||    
T  1714078 atcaagaaaatatttcaatcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtctt 1713979  T
Q  313 gaaattttcttgataaattttgtcactgtatctattatttccctat 358  Q
    ||||||||| | ||||||||| ||||||||| ||| ||||||||||    
T  1713978 gaaattttcctaataaattttatcactgtatttatcatttccctat 1713933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 364 - 494
Target Start/End: Complemental strand, 39926572 - 39926443
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctg 463  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||| ||    
T  39926572 ttagttaagtaacgcagatgttaaaatctgcg-atcttaacatgcgctgcgcaacttaactcacgctggaattaacactttcgtgagttaactcacgttg 39926474  T
Q  464 ggaattaacatttgcgtgagttaactcacgc 494  Q
      |||||||| |||||||| |||| ||||||    
T  39926473 aaaattaacacttgcgtgaattaattcacgc 39926443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 197 - 344
Target Start/End: Original strand, 2671895 - 2672042
Alignment:
Q  197 tttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaa-tcaagggaggtaatggtgtgtaattaaggaaaagtgtt 295  Q
    ||||||||||||||| |||||||||| || |||  |||||||||||||||| |||| |||| |||  |||| ||||| ||||||||||||||||  ||||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttat-tggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgtt 2671993  T
Q  296 agcaaatacactgtcttgaaattttcttgataaattttgtcactgtatc 344  Q
    | ||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  2671994 aacaaatacactgtcttaaaattttcttgatacattttgtcactttatc 2672042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 31192073 - 31192210
Alignment:
Q  219 aaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaatt 318  Q
    ||||| ||||||||||||||||||||||| |   | |||| ||| ||| |||| |||||||||||||||||  | ||||||||||| ||||||| |||||    
T  31192073 aaaatatctcaatcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaatt 31192172  T
Q  319 ttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||||||||| | ||| ||||||||||||| ||||||||    
T  31192173 ttcttgatacagtttatcactgtatctatcatttccct 31192210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 48897816 - 48897675
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||| |||||||||||||| ||||| ||||||| |||   | ||||||||||||| || || ||||||| |||  |||||||||    
T  48897816 attgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatggtgt 48897717  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaatt 318  Q
    ||||||||| |||  |||||||||||| |||| |||||||||    
T  48897716 gtaattaagaaaagatgttagcaaatagactgccttgaaatt 48897675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 40840771 - 40840633
Alignment:
Q  190 tagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaa 289  Q
    |||||| ||||||||||  ||||||||| ||||||| ||||  |||||||||| |||| ||||||||||||| |||||||||| ||| |||| || | ||    
T  40840771 tagagaatttttatcaaatatttatcaaaaaaatgtttcaactaattaaatttattatttggcggaaatcaaaggaggtaatgatgtataatcaaag-aa 40840673  T
Q  290 agtgttagcaaatacactgtcttgaaattttcttgataaa 329  Q
    || |||| |  ||||||| |||||||||||||||||||||    
T  40840672 agagttaacctatacactctcttgaaattttcttgataaa 40840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 8004359 - 8004285
Alignment:
Q  446 atgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    |||||||||||| |||||| |||||||| || |||||||||||||||||| || ||||||| |||||||||||||    
T  8004359 atgagttaactcgcgctggaaattaacacttacgtgagttaactcacgcaagagtattttgagaagttcagttgg 8004285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 558
Target Start/End: Original strand, 15042961 - 15043042
Alignment:
Q  477 gcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattcta 558  Q
    |||| |||||||||||||| |  |||||| |||||||  |||||| |||||||||||||| |||||||| ||||||||||||    
T  15042961 gcgtaagttaactcacgcaggggtattttaggaagtttggttggaaacgaacaaaatgtgatgggagaagagcagaattcta 15043042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 464
Target Start/End: Original strand, 22754718 - 22754811
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctg 463  Q
    |||||||||||| | ||||||||||||||||||||     ||||||||  |||||||||||||||||||||||||  ||||  ||||||||||||| |||    
T  22754718 ttagttaagtaatgtaagtgttaaaatctgcgcat-----catgcgct--gcaacttaactcacgctggaattaacacttgcgtgagttaactcacactg 22754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 490 - 557
Target Start/End: Original strand, 22754818 - 22754886
Alignment:
Q  490 cacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagc-agaattct 557  Q
    |||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| ||| ||||||||    
T  22754818 cacgcaagaatattttgggaagttcagttgaacgcgagcaaaatgtgttgggagaagagcgagaattct 22754886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 39926439 - 39926355
Alignment:
Q  466 aattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagca 550  Q
    |||||||| |||||||| ||||||||| ||   |||||||| ||||||||||| ||| ||| |||||||||||||||||| ||||    
T  39926439 aattaacacttgcgtgaattaactcacacagagatattttgagaagttcagtttgacgcgagcaaaatgtgttgggagaagagca 39926355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 8004406 - 8004364
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacat 406  Q
    |||||||||||||| |||||||||||||||| |||||| ||||    
T  8004406 ttagttaagtaacgtaagtgttaaaatctgcacatctttacat 8004364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 556
Target Start/End: Original strand, 46181042 - 46181149
Alignment:
Q  447 tgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaat 546  Q
    ||||||||||| ||| ||  |||||||  || ||||||||| ||||||| | ||||||| |||||||  |||||   ||| ||||| || ||||||||||    
T  46181042 tgagttaactcgcgcagg--attaacacatgtgtgagttaaatcacgcagggatatttttggaagtttggttgggagcgagcaaaacgtattgggagaat 46181139  T
Q  547 agcagaattc 556  Q
    ||||||||||    
T  46181140 agcagaattc 46181149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 557
Target Start/End: Complemental strand, 19234397 - 19234352
Alignment:
Q  512 ttcagttggacacgaacaaaatgtgttgggagaatagcagaattct 557  Q
    ||||||||| | ||| |||||||||||||||||| |||||||||||    
T  19234397 ttcagttgggcgcgagcaaaatgtgttgggagaagagcagaattct 19234352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 45004483 - 45004435
Alignment:
Q  451 ttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaat 500  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||| ||||    
T  45004483 ttaactcacgttgg-aattaacacttgcgtgagttaactcacgcaggaat 45004435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 544
Target Start/End: Original strand, 44798862 - 44798894
Alignment:
Q  512 ttcagttggacacgaacaaaatgtgttgggaga 544  Q
    ||||||||||| |||||||||||||||||||||    
T  44798862 ttcagttggacgcgaacaaaatgtgttgggaga 44798894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 45004489 - 45004441
Alignment:
Q  413 cgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgc 461  Q
    |||||||||||||||| |||||||||  ||||  |||||||||||||||    
T  45004489 cgcaacttaactcacgttggaattaacacttgcgtgagttaactcacgc 45004441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 7e-54; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 367 - 558
Target Start/End: Original strand, 34328560 - 34328749
Alignment:
Q  367 gttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctggga 466  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||  ||||  |||||||||||||||| |||    
T  34328560 gttaagtaacgcaagtgttaaaatctgtgcatcttaacatgtgctgcgcaatttaactcacgttggaattaacacttgcgtgagttaactcacgct-gga 34328658  T
Q  467 attaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattcta 558  Q
    ||||||| ||| ||||||||||| || || || ||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||    
T  34328659 attaacacttgtgtgagttaactaacaca-gagtattttgggaagttcagttggacgcgaacaaaacttgttgggaaaatagcagaattcta 34328749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 182 - 355
Target Start/End: Complemental strand, 23611880 - 23611708
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| || ||||||||||| ||||||||||  ||||||    
T  23611880 tatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatgg-atgtaat 23611782  T
Q  282 taaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||| ||| |||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||    
T  23611781 taagtaaaggtgttaacaaatacactgttttgaaattttcttgataaattttatcattgtatctatcatttccc 23611708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 46413849 - 46413700
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctgg---cggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacac 306  Q
    ||||||||||||||||||||| |||||||||||||||| |||   ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  46413849 tttatcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacac 46413750  T
Q  307 tgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||||||    
T  46413749 tgtcttgaaatttttttaataaattttgtcaatgtatctatcatttccct 46413700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 177 - 323
Target Start/End: Complemental strand, 21882905 - 21882759
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||| |||||| ||||||| || |||||||  |||||  |||||||||||||||| || |||||||||||||||||||||||||    
T  21882905 attgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgt 21882806  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21882805 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctt 21882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 182 - 355
Target Start/End: Original strand, 20125567 - 20125740
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| |||||||| |||||||||||||| ||||||||||||| |||  |||||||||||||||  || | ||||| || | || ||||||||||||||    
T  20125567 tatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaat 20125666  T
Q  282 taaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    ||| |||| || ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||    
T  20125667 taaagaaaggtattagcaaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttccc 20125740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 177 - 334
Target Start/End: Original strand, 22631452 - 22631609
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| ||| |||  |||||| ||||||| ||||||||||  |||||  |||||||||||||||| || |||||||||| |||| |||| ||||    
T  22631452 attgttatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgt 22631551  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttg 334  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||    
T  22631552 gtaattaaggaaaggtgttagctaatacaccgtcttgaaattttcttgataaagtttg 22631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 46297590 - 46297711
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  || || |||||||||| || || |||||||||||| ||||||||||||||    
T  46297590 tatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaat 46297689  T
Q  282 taaggaaaagtgttagcaaata 303  Q
    |||||||| |||||||||||||    
T  46297690 taaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 8123663 - 8123842
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||  |||||| || |||| ||||  |||    
T  8123663 attgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataataatgt 8123762  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
     ||||||| |||| ||||||||||||| || ||| | ||||||||| |||| ||||||| ||| ||||||| ||||||||    
T  8123763 ataattaaagaaaggtgttagcaaatataccgtcctaaaattttctggatacattttgttactatatctatcatttccct 8123842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 1985023 - 1985128
Alignment:
Q  222 atgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttc 321  Q
    ||||||||  |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||    
T  1985023 atgtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaaattttc 1985122  T
Q  322 ttgata 327  Q
    ||||||    
T  1985123 ttgata 1985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 382 - 515
Target Start/End: Complemental strand, 11561500 - 11561368
Alignment:
Q  382 tgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  |||   |||||||||||||  | | ||||| || |||||||    
T  11561500 tgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgttgaaattaacactttcctgagttaactcac-attgaaattagcacttgcgtg 11561402  T
Q  482 agttaactcacgcatgaatattttgggaagttca 515  Q
    |||||||| ||||| | |||||||||||||||||    
T  11561401 agttaactaacgcaaggatattttgggaagttca 11561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 381 - 520
Target Start/End: Original strand, 9384608 - 9384746
Alignment:
Q  381 gtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgt 480  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||  ||||  | |||||||||||||| |||||||||| || |||    
T  9384608 gtgttaaaatatgcgcatcttaacatgtgctgcgcaacttaactcacactgaaattaacacttgccttagttaactcacgct-ggaattaacaattacgt 9384706  T
Q  481 gagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    ||||||||| |||||    |||||||| ||||||||||||    
T  9384707 gagttaacttacgcagaggtattttggaaagttcagttgg 9384746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 364 - 494
Target Start/End: Original strand, 43466693 - 43466823
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgctg 463  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||| | |||||||||||||||| ||||||  ||||| |||||||||||| |||     
T  43466693 ttagttaagtaacacaagtgttaaaatctgcgcatcttaatatgcactgtggaacttaactcacgctgaaattaatacttgtgtgagttaactcaggcta 43466792  T
Q  464 ggaattaacatttgcgtgagttaactcacgc 494  Q
    | |||||||| ||  | |||||||| |||||    
T  43466793 gaaattaacacttatgggagttaacccacgc 43466823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 182 - 355
Target Start/End: Original strand, 19511387 - 19511560
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| || ||||| |||||||||||||| || ||||||| || | |  ||||||||||| |||| |   ||||||||| |||| |||| ||| |||||    
T  19511387 tatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaat 19511486  T
Q  282 taaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    |||||||| ||||||  ||||||||||||| |||||||| |||||||| ||| |||||| |||||| |||||||    
T  19511487 taaggaaaggtgttaataaatacactgtctcgaaatttttttgataaaatttatcactgcatctatcatttccc 19511560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 23730645 - 23730507
Alignment:
Q  171 atgaagattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaa 270  Q
    ||||| |||| |||||| | |||||| |||||||||||||| |||||||||| || |||   ||||||||| ||||| || ||||||||||| |||||||    
T  23730645 atgaacattgctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaa 23730546  T
Q  271 tggtgtgtaattaaggaaaagtgttagcaaatacactgtct 311  Q
    ||  ||||||||||||||| |||||| ||||||||||||||    
T  23730545 tg--gtgtaattaaggaaaggtgttaacaaatacactgtct 23730507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 193 - 356
Target Start/End: Complemental strand, 24250574 - 24250417
Alignment:
Q  193 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagt 292  Q
    |||| |||||||||||||| ||||||||||  ||| |  ||||| |||||||||| || ||||||||||||||||||||||| |||||||||| |||  |    
T  24250574 agagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaattaagaaaagat 24250475  T
Q  293 gttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
     |||| |||||| |||||||||||      ||||||| |||||||||||||| || ||||||||    
T  24250474 attagtaaatacgctgtcttgaaa------tgataaaatttgtcactgtatcaatcatttccct 24250417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 44600996 - 44601109
Alignment:
Q  193 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagt 292  Q
    ||||||||||||||||||||   |||||||||| ||||||||||||||||||||| ||||        |||||| ||||| |||||||||||| ||| ||    
T  44600996 agagtttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttggc--------agggagataatgatgtgtaattaagaaaatgt 44601087  T
Q  293 gttagcaaatacactgtcttga 314  Q
    ||||||||||||||||||||||    
T  44601088 gttagcaaatacactgtcttga 44601109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 447 - 556
Target Start/End: Complemental strand, 2377264 - 2377156
Alignment:
Q  447 tgagttaactcacgctgggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaat 546  Q
    |||||||||||| |||| | || |||||||||||||||||||||||||| |  ||||||||||||||  ||| ||  ||| ||||||||| ||||||||     
T  2377264 tgagttaactcatgctgagtat-aacatttgcgtgagttaactcacgcaggggtattttgggaagtttggtttgaagcgagcaaaatgtgatgggagaag 2377166  T
Q  547 agcagaattc 556  Q
    ||||||||||    
T  2377165 agcagaattc 2377156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 550
Target Start/End: Complemental strand, 47664593 - 47664519
Alignment:
Q  476 tgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagca 550  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||| | |||| |||||| || ||| |||| ||||    
T  47664593 tgcgtgagttaactcacgcttgagtattttgggaagtttagttgaaaacgagcaaaatatgatggaagaagagca 47664519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 31589507 - 31589463
Alignment:
Q  476 tgcgtgagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||    
T  31589507 tgcgtgacttaactcacgcatgggtattttgggaagttcagttgg 31589463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 556
Target Start/End: Original strand, 5899218 - 5899299
Alignment:
Q  475 ttgcgtgagttaactcacgcatgaa-tattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    |||||||||||||||||||| |||  |||||| ||||||| |||||| | ||| ||||| |||||||||||| ||| ||||||    
T  5899218 ttgcgtgagttaactcacgc-tgaggtattttaggaagtttagttgggcgcgagcaaaaagtgttgggagaagagccgaattc 5899299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 15127604 - 15127564
Alignment:
Q  299 aaatacactgtcttgaaattttcttgataaattttgtcact 339  Q
    |||||||||||||| |||||||||||||| || ||||||||    
T  15127604 aaatacactgtcttaaaattttcttgatacatcttgtcact 15127564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 21066364 - 21066408
Alignment:
Q  512 ttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    ||||||||| | |||  ||||||||||||||||||||||||||||    
T  21066364 ttcagttgggcgcgattaaaatgtgttgggagaatagcagaattc 21066408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 23284820 - 23284773
Alignment:
Q  446 atgagttaactcacgctgggaattaacatttgcgtgagttaactcacgc 494  Q
    |||| |||||||||||||| ||||||||  |||||||||||||||||||    
T  23284820 atgatttaactcacgctgg-aattaacacctgcgtgagttaactcacgc 23284773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 171 - 352
Target Start/End: Complemental strand, 42504333 - 42504155
Alignment:
Q  171 atgaagattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaa 270  Q
    ||||| |||| |||||| |||||||||||||||   ||||| ||||||||||  | |||| |||||||||||||||| || |||||||||||||||||||    
T  42504333 atgaacattgctatttatctagagagtttttat---gaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaa 42504237  T
Q  271 tggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    || |||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  42504236 tgatgtgtaattaaggaaaggtgttaacaaatacactgtcttaaaattttcttgatacattttgtcattgtatctatcattt 42504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 177 - 354
Target Start/End: Original strand, 37762777 - 37762956
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctca--atcaattaaatttgttatctggcggaaatcaagggaggtaatggt 274  Q
    |||| |||||| ||| |||||||| ||||||||||||||||||||||| | ||  | |||||||||||||||| || || || |||| |||  ||||| |    
T  37762777 attgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaataatgat 37762876  T
Q  275 gtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttcc 354  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  37762877 gtgtaattaaggaaaagtgttaacaaatacattgtcttgaaatttttttgataaattttgtcactctatctatcatttcc 37762956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 190 - 355
Target Start/End: Original strand, 5288507 - 5288672
Alignment:
Q  190 tagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaa 289  Q
    ||||||| |||||| ||||||| || ||||||||||||||  |||||||||||||||| || || |||||||||||| |||||||||||||||||  |||    
T  5288507 tagagagattttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaa 5288606  T
Q  290 agtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
     ||||||||||||| || ||||||||| |||||||||| | ||||||||| ||||||| |||||||    
T  5288607 tgtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccc 5288672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 177 - 323
Target Start/End: Original strand, 24060548 - 24060694
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||| |   |||||||||||||||  |   ||||||||||||| |||||||||    
T  24060548 attgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgt 24060647  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctt 323  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||    
T  24060648 gtaattaaggaaatgtgttagcaaatacactgttttaaaattttctt 24060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 19482490 - 19482609
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||||||||||||  | ||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  19482490 attgctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgt 19482589  T
Q  277 gtaattaaggaaaagtgtta 296  Q
    ||||||||||||| ||||||    
T  19482590 gtaattaaggaaaggtgtta 19482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 30220727 - 30220838
Alignment:
Q  232 caattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaatt 331  Q
    ||||||| ||||||||  | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  30220727 caattaattttgttattggccggaaatcaagggag-tattggtgtgtaattaaggaaaagtgttagcaaatacactgtcttaaaattttcttgatacatt 30220825  T
Q  332 ttgtcactgtatc 344  Q
    ||||||| |||||    
T  30220826 ttgtcaccgtatc 30220838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 41545392 - 41545514
Alignment:
Q  182 tatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaat 281  Q
    |||||| |||||||||||  ||||||||||||||||||||| | ||||| |||||||||||||||| |||| |||||| | | ||||||| |||||||||    
T  41545392 tatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaattgtgtgtaat 41545491  T
Q  282 taaggaaaagtgttagcaaatac 304  Q
    ||| |||| ||||||||||||||    
T  41545492 taatgaaaggtgttagcaaatac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 25817649 - 25817757
Alignment:
Q  189 ctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaa 288  Q
    |||||||  |||||||||||||| |||||||||| ||||||  |||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||    
T  25817649 ctagagacattttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaagaaa 25817748  T
Q  289 aagtgttag 297  Q
    | |||||||    
T  25817749 atgtgttag 25817757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 29065381 - 29065277
Alignment:
Q  210 tttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgt 309  Q
    ||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| |||| |||||| | ||| ||| ||    
T  29065381 tttatcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttaactaatgcaccgt 29065282  T
Q  310 cttga 314  Q
    |||||    
T  29065281 cttga 29065277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 177 - 355
Target Start/End: Original strand, 16528535 - 16528716
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggta---atgg 273  Q
    |||| |||||| |||||||| ||||||  |||||| ||||| | || ||||||  |||||||||||||||| || ||||||||||  ||  ||   ||||    
T  16528535 attgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaatgatatattaatgg 16528634  T
Q  274 tgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccc 355  Q
    ||||||||||| |||| |||||| |||||||||| |||| |||||||||||||| || ||||| |||||||||| |||||||    
T  16528635 tgtgtaattaaagaaatgtgttaacaaatacactatcttaaaattttcttgatacatgttgtcgctgtatctatcatttccc 16528716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 363 - 461
Target Start/End: Complemental strand, 46844721 - 46844623
Alignment:
Q  363 attagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacgc 461  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||  ||||  |||||||||||||||    
T  46844721 attagttaagtaacgcagatgttaaaatctgcacatcttaacatgcgctgcgcaacttaactcacgttgaaattaacacttgcgtgagttaactcacgc 46844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 51304431 - 51304300
Alignment:
Q  180 gttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgta 279  Q
    |||||||| ||||||||||||||| |||||| ||| |||||||| || |||||||||||||||||||| || |||||||||| |||| |||||| ||| |    
T  51304431 gttatttatctagagagtttttattaagaatatat-aagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgca 51304333  T
Q  280 attaaggaaaagtgttagcaaatacactgtctt 312  Q
    |||||  |||  |||||||||||||| ||||||    
T  51304332 attaaaaaaatatgttagcaaatacattgtctt 51304300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 366 - 495
Target Start/End: Original strand, 5314312 - 5314441
Alignment:
Q  366 agttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctgg-aattaaatcttgtatgagttaactcacgctgg 464  Q
    |||||| | ||||| |||||||||||||||   ||||||||| ||| |||||||||||| ||||||| ||||||  ||||  |||||||| ||||||| |    
T  5314312 agttaactcacgcaggtgttaaaatctgcgttacttaacatgagctacgcaacttaacttacgctggaaattaacacttgcgtgagttaattcacgct-g 5314410  T
Q  465 gaattaacatttgcgtgagttaactcacgca 495  Q
    ||||||||| |||||||||||||||||||||    
T  5314411 gaattaacacttgcgtgagttaactcacgca 5314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 19663341 - 19663433
Alignment:
Q  260 aagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    ||||||||||||| |||||||||||| ||| ||     |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19663341 aagggaggtaatgatgtgtaattaagaaaaggta----caaatacactctcttaaaattttcttgataaattttgtcactgtatctatcatttccct 19663433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 19482799 - 19482864
Alignment:
Q  291 gtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattatttccct 356  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  19482799 gtgttaacaaataaactgtcttgaaattttcttgataaattttgtcactgtatctatattttccct 19482864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 45682765 - 45682857
Alignment:
Q  368 ttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaactcacgctggaattaaatcttgtatgagttaactcacg 460  Q
    |||| ||| |||||||||||||||||| |||||||||||  | || ||||||||||||||| |||||||||  ||||  ||||||||||||||    
T  45682765 ttaactaatgcaagtgttaaaatctgcccatcttaacatatgttgtgcaacttaactcacgttggaattaacacttgcctgagttaactcacg 45682857  T

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Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 46844651 - 46844572
Alignment:
Q  466 aattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaa 545  Q
    |||||||| ||||||||||||||||||||||| |||||||  ||||||||||| | | ||||||||||||| | ||||||    
T  46844651 aattaacacttgcgtgagttaactcacgcatggatattttaagaagttcagtttgccgcgaacaaaatgtgctaggagaa 46844572  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 19663335 - 19663274
Alignment:
Q  291 gtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctattattt 352  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||    
T  19663335 gtgttaacaaatacactgtcttgacattttttttataaattttgtcactgtatctatcattt 19663274  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 419 - 495
Target Start/End: Original strand, 23811319 - 23811393
Alignment:
Q  419 ttaactcacgctggaattaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaactcacgca 495  Q
    ||||||||||||| ||||||| ||||  |||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  23811319 ttaactcacgctgtaattaaa-cttgcgtgagttaactcacgctgg-aattaacacttgcgtgagttatctcacgca 23811393  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 2765489 - 2765339
Alignment:
Q  192 gagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaag 291  Q
    |||||||||||| |||| || |||||||||| |||| |  ||||||||||||||||  | |  |||||| ||||| ||||| ||||||||||| |||| |    
T  2765489 gagagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaagg 2765390  T
Q  292 tgtt-agcaaatacactgtcttgaaattttcttgataaattttgtcactgtatc 344  Q
    |||| |  ||||||| |||||||||   || |||||| ||||||||||| ||||    
T  2765389 tgttaaaaaaatacagtgtcttgaa---tttttgatacattttgtcactatatc 2765339  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 41485716 - 41485817
Alignment:
Q  184 tttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggc-ggaaatcaagggaggtaatggtgtgtaatt 282  Q
    |||| ||||||||||||||||||||||| |||||||||| || | |  ||||||||||| |   ||||| |||||| |||||||||||||| ||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattt-tctgctggcaggaaattaagggaggtaatggggtgtaatt 41485814  T
Q  283 aag 285  Q
    |||    
T  41485815 aag 41485817  T

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Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 42108821 - 42108752
Alignment:
Q  178 ttgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttat 247  Q
    |||||||||| ||||| | ||||||||||||||| |||||||||| || |||  ||||||||||||||||    
T  42108821 ttgttatttatctagaaattttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttat 42108752  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 13218442 - 13218497
Alignment:
Q  192 gagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttat 247  Q
    |||||||||||| || ||||||| ||||||| |||||  |||||||||||||||||    
T  13218442 gagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttat 13218497  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 20394123 - 20394077
Alignment:
Q  447 tgagttaactcacgctgggaattaacatttgcgtgagttaactcacgc 494  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||||    
T  20394123 tgagttaactcacgccgg-aattaacatctgcgtgagttaactcacgc 20394077  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 10011691 - 10011753
Alignment:
Q  479 gtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttggg 541  Q
    ||||||||||||| ||| || |||||| || | ||||||||||| ||| ||||||||||||||    
T  10011691 gtgagttaactcatgcaggagtattttcggtatttcagttggacgcgagcaaaatgtgttggg 10011753  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 10018832 - 10018894
Alignment:
Q  479 gtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttggg 541  Q
    ||||||||||||| ||| || |||||| || | ||||||||||| ||| ||||||||||||||    
T  10018832 gtgagttaactcatgcaggagtattttcggtatttcagttggacgcgagcaaaatgtgttggg 10018894  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 10011650 - 10011605
Alignment:
Q  470 aacatttgcgtgagttaactcacgcatgaatattttgggaagttca 515  Q
    |||| ||||||||||||||||| ||| || ||||||||||||||||    
T  10011650 aacacttgcgtgagttaactcatgcaggagtattttgggaagttca 10011605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 10018791 - 10018746
Alignment:
Q  470 aacatttgcgtgagttaactcacgcatgaatattttgggaagttca 515  Q
    |||| ||||||||||||||||| ||| || ||||||||||||||||    
T  10018791 aacacttgcgtgagttaactcatgcaggagtattttgggaagttca 10018746  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 494
Target Start/End: Original strand, 23811277 - 23811360
Alignment:
Q  410 ctgcgcaacttaactcacgctggaa-ttaaatcttgtatgagttaactcacgctgggaattaacatttgcgtgagttaactcacgc 494  Q
    ||||||||||||||||||   |||| ||||  ||||| |||||||||||||||| | |||||| | ||||||||||||||||||||    
T  23811277 ctgcgcaacttaactcacatcggaaattaacacttgtgtgagttaactcacgct-gtaattaa-acttgcgtgagttaactcacgc 23811360  T

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Target: scaffold0194 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 242 - 359
Target Start/End: Complemental strand, 27180 - 27063
Alignment:
Q  242 tgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgt 341  Q
    |||||| |||||||||||||||||| |||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgt 27081  T
Q  342 atctattatttccctatc 359  Q
    |||||| |||||||||||    
T  27080 atctatcatttccctatc 27063  T

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Target: scaffold0122 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 18606 - 18749
Alignment:
Q  177 attgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgt 276  Q
    |||| |||||| ||| |||| |||||| ||||||| |||||||||| |||| | ||||||||||||||||| || || |||| ||||||| ||||||||     
T  18606 attgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatggtga 18705  T
Q  277 gtaattaaggaaaagtgttagcaaatacactgtcttgaaatttt 320  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  18706 gtaattaaggaaatgtgttagcaaatacactgttttgaattttt 18749  T

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Target: scaffold0018 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 70059 - 69949
Alignment:
Q  179 tgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggcggaaatcaagggaggtaatggtgtgt 278  Q
    ||||||||| |||||||||||||||| | |||| |||||||||| || |||  ||||||||||||||||  | ||||||||||||||| |||||| ||||    
T  70059 tgttatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgt 69960  T
Q  279 aattaaggaaa 289  Q
    |||||||||||    
T  69959 aattaaggaaa 69949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 556
Target Start/End: Original strand, 12538 - 12630
Alignment:
Q  464 ggaattaacatttgcgtgagttaactcacgcatgaatattttgggaagttcagttggacacgaacaaaatgtgttgggagaatagcagaattc 556  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| | |||| |||||||||| || ||| ||||||||||    
T  12538 ggaattagcatttgcgtgagttaactcacgcaaggatattttgggaagttcagttgggcgcgaataaaatgtgttcggggaagagcagaattc 12630  T

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Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 12471 - 12529
Alignment:
Q  364 ttagttaagtaacgcaagtgttaaaatctgcgcatcttaacatgcgctgcgcaacttaa 422  Q
    ||||||||||||  || |||||||||||| || ||||||||||||| || |||||||||    
T  12471 ttagttaagtaatacatgtgttaaaatctacgaatcttaacatgcgttgtgcaacttaa 12529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 19220 - 19339
Alignment:
Q  235 ttaaatttgttatctggcggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttgataaattttg 334  Q
    ||||||||||||| || |||||||||| ||||||||| ||||||  ||||  ||| || ||| ||||||||| | ||| |||||||||| ||||||||      
T  19220 ttaaatttgttatttgacggaaatcaaaggaggtaatagtgtgtcgttaaaaaaaggtattaacaaatacacagacttaaaattttcttaataaatttga 19319  T
Q  335 tcactgtatctattatttcc 354  Q
    ||||  ||||||| ||||||    
T  19320 tcacaatatctatcatttcc 19339  T

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Target: scaffold0260 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 20513 - 20557
Alignment:
Q  476 tgcgtgagttaactcacgcatgaatattttgggaagttcagttgg 520  Q
    ||||||||||||||||| || || |||||||||||||||||||||    
T  20513 tgcgtgagttaactcacacaggagtattttgggaagttcagttgg 20557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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