View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_low_4 (Length: 467)
Name: NF10953_low_4
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 8776580 - 8777024
Alignment:
| Q |
18 |
aagacttatggaatgtcttgacaggccttatgaccaaaaagagtatgatgagcttcttctcaaagcatctaagcatacgaaaaaagaacgccatctagaa |
117 |
Q |
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| T |
8776580 |
aagacttatggaatgtcttgacaggccttatgaccaaaaagagtatgatgagcttcttctcaaagcatctaagcatacaaaaaaagaacgccatctagaa |
8776679 |
T |
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| Q |
118 |
acacggcagggggtggtcaaagcatattactctaaaggtctcagcaaatcatatcttgatatgtaccctggtaggtccatatcttttcaagtattcttct |
217 |
Q |
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| T |
8776680 |
acccggcggggggtggtcaaagcatattactctaaaggtcttagcaaatcatatcttgatatgtaccctggtaggtccatatcttttcaagtattcttct |
8776779 |
T |
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| Q |
218 |
ggcttcttagattttcttcttttatttataaaaatggtatagcttaaagtttgatcctaaggatgcaatcaagattcattgctatatattcaatcatcac |
317 |
Q |
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| T |
8776780 |
ggcttcttagattttcttcttttatttataaaaatggtatagcttaaagtttgatcctaaggatgcaatcaagattcattgctctatattcaatcatcac |
8776879 |
T |
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| Q |
318 |
cgctaccattgcaaaactctcacttgatgtgttgggtggaccaacgaaaacttagttgaattataagattttagagaagagaaggttatacacttcatct |
417 |
Q |
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| T |
8776880 |
cactaccattgcaaaactctcacttgatgtgttgggtggaccaacgaaaacttagttgaattataagcttttagagaagagaaggttatacacttcatct |
8776979 |
T |
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| Q |
418 |
ttcatgtcatgaaaccttaaaactatcttgtattgacatatattt |
462 |
Q |
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| T |
8776980 |
ttcatgtcatgaaaccttaaaactatcttgtattgacatatattt |
8777024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 8782876 - 8782965
Alignment:
| Q |
331 |
aaactctcacttgatgtgttgggtggaccaacgaaaacttagttgaattataagattttaga-gaagagaaggttatacacttcatcttt |
419 |
Q |
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| T |
8782876 |
aaaccctcacttgatgtgttgggtggaccaaccaaaacatagttgaattatatgatttaagattaagagaaggttatacacttcatcttt |
8782965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 8788936 - 8789047
Alignment:
| Q |
342 |
tgatgtgttgggtggaccaacgaaaacttagttgaattataagattttaga-gaagagaaggttatacacttcatctttcatgtcatgaaaccttaaaac |
440 |
Q |
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| T |
8788936 |
tgatgtgttgggtggaccaaccaaaacatagttgaattatatgatttgtgattaagagaaggttatacacttcatctttcttgttat-aaaacatgaaac |
8789034 |
T |
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| Q |
441 |
tatcttgtattga |
453 |
Q |
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| T |
8789035 |
tatctcgtattga |
8789047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 8782567 - 8782617
Alignment:
| Q |
13 |
aggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtat |
63 |
Q |
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| T |
8782567 |
aggagaagacttttggaacatcttgacaggccttatgaccagaaagagtat |
8782617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 8788326 - 8788378
Alignment:
| Q |
13 |
aggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatga |
65 |
Q |
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| T |
8788326 |
aggagaagacttttggaacatcttgaaaggccttataaccaacaagagtatga |
8788378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 2541098 - 2540893
Alignment:
| Q |
13 |
aggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatgatgagcttcttctcaaagcatctaagcatacgaaaaaagaacgccatc |
112 |
Q |
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||||||| |||||||||||||||||| |||||||||||| || ||||||||||||| ||||| ||||||| |||||| || ||||||||||||| |||| |
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| T |
2541098 |
aggagaacacttatggaatgtcttgaaaggccttatgacgaagaagagtatgatgaccttctgctcaaagtatctaaacaagcgaaaaaagaacgtcatc |
2540999 |
T |
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| Q |
113 |
tagaaacacggcagggggtggtcaaagcatattactctaaaggtctcagcaaatcatatcttgatatgtaccctggtaggtccatatcttttcaagtatt |
212 |
Q |
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|||||||||||||||||||||| ||| ||||| ||| | ||||||||||||||||||||||||||| | |||| ||||||||||||| || ||||||||| |
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| T |
2540998 |
tagaaacacggcagggggtggttaaatcatatcactgtgaaggtctcagcaaatcatatcttgatacgcaccccggtaggtccatattttctcaagtatt |
2540899 |
T |
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| Q |
213 |
cttctg |
218 |
Q |
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|||||| |
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| T |
2540898 |
cttctg |
2540893 |
T |
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