View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10953_low_5 (Length: 402)

Name: NF10953_low_5
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10953_low_5
NF10953_low_5
[»] chr8 (4 HSPs)
chr8 (207-340)||(37193273-37193406)
chr8 (207-340)||(37182143-37182274)
chr8 (121-153)||(3193523-3193555)
chr8 (213-289)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (207-341)||(21105366-21105500)
chr3 (207-273)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (209-336)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (209-336)||(10233990-10234117)
chr6 (266-334)||(4619835-4619903)
[»] chr2 (1 HSPs)
chr2 (119-153)||(17854474-17854508)
[»] scaffold0288 (1 HSPs)
scaffold0288 (266-334)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 207 - 340
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q  207 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 306  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  307 tcaccatggttttgtgagtttccaaacacaggct 340  Q
    ||||| ||||||  ||||||||||||||||||||    
T  37193306 tcaccgtggtttcatgagtttccaaacacaggct 37193273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 207 - 340
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q  207 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 306  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||  ||  |||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt 37182177  T
Q  307 tcaccatggttttgtgagtttccaaacacaggct 340  Q
    ||||| || |||  ||||||||||||||||||||    
T  37182176 tcaccgtgttttcatgagtttccaaacacaggct 37182143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 3193555 - 3193523
Alignment:
Q  121 ttaaataatttagagcaactagtttaatctatt 153  Q
    |||||||| ||||||||||||||||||||||||    
T  3193555 ttaaataaattagagcaactagtttaatctatt 3193523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q  213 ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt 289  Q
    |||||||||||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||| |  |||||||||    
T  29461186 ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt 29461262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q  207 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 306  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  307 tcaccatggttttgtgagtttccaaacacaggcta 341  Q
    ||||||||||||||| ||||| |||||||| ||||    
T  21105400 tcaccatggttttgttagttttcaaacacatgcta 21105366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  207 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 273  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q  209 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 308  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  309 accatggttttgtgagtttccaaacaca 336  Q
    ||||||||||||||||||| ||||||||    
T  10818 accatggttttgtgagttttcaaacaca 10845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q  209 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 308  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  309 accatggttttgtgagtttccaaacaca 336  Q
    ||||||||||||||||||| ||||||||    
T  10234090 accatggttttgtgagttttcaaacaca 10234117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 4619903 - 4619835
Alignment:
Q  266 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 334  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  4619903 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 4619835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 17854508 - 17854474
Alignment:
Q  119 aattaaataatttagagcaactagtttaatctatt 153  Q
    |||||||||| ||||||||||||||||||||||||    
T  17854508 aattaaataaattagagcaactagtttaatctatt 17854474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 969 - 1037
Alignment:
Q  266 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 334  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  969 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 1037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University