View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10953_low_9 (Length: 354)
Name: NF10953_low_9
Description: NF10953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10953_low_9 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 11165352 - 11165436
Alignment:
| Q |
270 |
ttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagc |
354 |
Q |
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| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagc |
11165436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 354
Target Start/End: Original strand, 11208364 - 11208485
Alignment:
| Q |
233 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
332 |
Q |
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| T |
11208364 |
cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt |
11208463 |
T |
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| Q |
333 |
ttccttttcttttgacgaaagc |
354 |
Q |
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| T |
11208464 |
ttccttttcttttgacgaaagc |
11208485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 354
Target Start/End: Original strand, 11274926 - 11275047
Alignment:
| Q |
233 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
332 |
Q |
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| T |
11274926 |
cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt |
11275025 |
T |
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| Q |
333 |
ttccttttcttttgacgaaagc |
354 |
Q |
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| T |
11275026 |
ttccttttcttttaatgaaagc |
11275047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 233 - 352
Target Start/End: Original strand, 11169542 - 11169661
Alignment:
| Q |
233 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
332 |
Q |
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| T |
11169542 |
cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt |
11169641 |
T |
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| Q |
333 |
ttccttttcttttgacgaaa |
352 |
Q |
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| T |
11169642 |
tgccttttcttttgacgaaa |
11169661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 11155325 - 11155384
Alignment:
| Q |
295 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagc |
354 |
Q |
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|||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
11155325 |
agccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagc |
11155384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 11195772 - 11195831
Alignment:
| Q |
295 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagc |
354 |
Q |
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|||||| | ||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
11195772 |
agccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagc |
11195831 |
T |
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