View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_high_2 (Length: 433)

Name: NF10954A_high_2
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_high_2
NF10954A_high_2
[»] chr5 (7 HSPs)
chr5 (1-433)||(29013076-29013509)
chr5 (1-383)||(29365815-29366197)
chr5 (255-414)||(24085110-24085269)
chr5 (333-428)||(29014953-29015048)
chr5 (343-399)||(11095406-11095462)
chr5 (350-400)||(10391444-10391494)
chr5 (357-397)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (346-400)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (351-402)||(24193632-24193683)
chr4 (347-400)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (350-400)||(41809163-41809213)
chr2 (351-399)||(787435-787483)
chr2 (344-400)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (347-400)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 29013509 - 29013076
Alignment:
Q  1 gctactgttcttctcaaagagtttcttgctaaagggttgctgaatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013509 gctactgttcttctcaaagagtttcttgctaaagggttgctgaatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaaga 29013410  T
Q  101 agaaatctggtaaaccaggtggatttgttgatgtttcagttcgtgtttctgaagataatgaagaaccaaattctcactcaggtattgtaaattgttggtt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013409 agaaatctggtaaaccaagtggatttgttgatgtttcagttcgtgtttctgaagataatgaagaaccaaattctcactcaggtattgtaaattgttggtt 29013310  T
Q  201 cataactttcatatagattatgga-aaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatctattgg 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||    
T  29013309 cataactttcatatagattatggaaaaaatgtttctttttgtagcttgtttttttgtttctcttacgtgagtgaggtttttattcaatatgctctattgg 29013210  T
Q  300 gttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 399  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013209 gttcaattatttagtggaaaagttgaaaactttgatttaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 29013110  T
Q  400 gttatgaagtacgaatacaaacaccaaactcgat 433  Q
    ||||||||||||||| ||||||||||||| ||||    
T  29013109 gttatgaagtacgaacacaaacaccaaacacgat 29013076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 29366197 - 29365815
Alignment:
Q  1 gctactgttcttctcaaagagtttcttgctaaagggttgctgaatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29366197 gctactgttcttctcaaagagtttcttgctaaagggttgctgaatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaaga 29366098  T
Q  101 agaaatctggtaaaccaggtggatttgttgatgtttcagttcgtgtttctgaagataatgaagaaccaaattctcactcaggtattgtaaattgttggtt 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||| ||    
T  29366097 agaaatctggtaaaccaagtggatttgttgatgtttcagttcgtgtttctgaagataaagaagaaccaaattctcattcaggtattgtaaatgtttgatt 29365998  T
Q  201 cataactttcatatagattat-ggaaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatctattgg 299  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||       |||||||| | |||||||| |||||||||||||||| ||||||||    
T  29365997 cataaccttcatatagattatgggaaaaatgtttctttttgtagcttgtttttttgtttctctcatgtgagtgaagtttttattcaatatgctctattgg 29365898  T
Q  300 gttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctg 383  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  29365897 gttcaactatttagtggaaaaattgaaaactttgattg-aagtttaaggtccatttggattggattattgaggcttatctgctg 29365815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 255 - 414
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  255 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 354  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  355 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 414  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 428
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  333 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 428  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  343 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 399  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  350 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 400  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  357 gattggattattgaagcttatctgctggcataaacacttgt 397  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  346 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 400  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  351 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 402  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  347 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 400  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  350 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 400  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  351 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 399  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  344 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 400  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  347 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 400  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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