View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_high_3 (Length: 416)
Name: NF10954A_high_3
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 19460451 - 19460862
Alignment:
| Q |
1 |
tcacccgacaggtaggattgtaggaattttctctactggtatgttgagatctctcaccacccgctgagaaataaagttgtgggttgctcctctagtccac |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19460451 |
tcacccgataggtaggattgtaggaattttctctactggtatgttgagatctctcaccacccgctgagaaataaagttgtgggttgctccactagtccac |
19460550 |
T |
|
| Q |
101 |
tgtcaattaggattgtcaccacacttttcagaaaagtaccccaagtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19460551 |
tgtcaattaggattgtcaccacacttttcagaaaagtaccccaagtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcacc |
19460650 |
T |
|
| Q |
201 |
attctctcattcaaagaaccctcgagtccatttttctctagctccccccttctactccctctaattccttcacaatcatcaccttgaaatgttgttttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19460651 |
attctctcattcaaagaaccctcgagtccatttttctctagctccccccttctactccctctaattccttcacaatcatcaccttgaaatgctgttttac |
19460750 |
T |
|
| Q |
301 |
aaacatgcgtcgatgtgaattttttattacaagtgaagtagagttcctccttctctcccaatattctccttccgaaatagatcaaatcctcttccccttg |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19460751 |
aaacatgtgtcgatgtgaattttttattacaagtgaagtagagttcctccttctcttccaatattctccttctgaaatagatcaaatcctcttccccttg |
19460850 |
T |
|
| Q |
401 |
ttcatctcagtc |
412 |
Q |
| |
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||| | |||||| |
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| T |
19460851 |
ttcttatcagtc |
19460862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 10193115 - 10192773
Alignment:
| Q |
21 |
taggaattttctctactggtatgttgagatctctcaccacccgctgagaaataa----agttgtgggtt-gctcctctagtccactgtcaattaggattg |
115 |
Q |
| |
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||||||| | ||||||||||||| |||||||||| |||| |||||||||||| ||||||||||| ||| | ||| ||||||| ||||||||||| |
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| T |
10193115 |
taggaatgtactctactggtatgctgagatctctgaccaattgctgagaaataattaaagttgtgggtttgcttcactattccactggtaattaggattg |
10193016 |
T |
|
| Q |
116 |
tcaccacacttttcagaaaagtaccccaa-gtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcaccattctctcattcaa |
214 |
Q |
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||||| ||||||||||||||||||||||| |||||||| | |||| ||||||||||||||| |||||||||||| | |||||||||||| |||||||||| |
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|
| T |
10193015 |
tcaccgcacttttcagaaaagtaccccaaagtttgagtgccctcttcggagtaagccctactatgctttgaatggccaacttcaccattttctcattcaa |
10192916 |
T |
|
| Q |
215 |
agaaccctcgagtc---catttttctctagct-ccccccttctactccctctaa---ttccttcacaatcatcaccttgaaatgttgttttacaaacatg |
307 |
Q |
| |
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|||| ||| | || |||||| |||||||| |||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
10192915 |
agaa--ctcaactccttcattttgctctagctcccccccttctactccctcgaattcttccttcacaatcatcaccatgaaa---tgttttacaaacatg |
10192821 |
T |
|
| Q |
308 |
cgtcgatgtgaa-ttttttattacaagtgaagtagagttcctccttct |
354 |
Q |
| |
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| | |||||| |||||||| |||||||||| ||||||||||||||| |
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|
| T |
10192820 |
tgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttct |
10192773 |
T |
|
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