View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_104 (Length: 362)

Name: NF10954A_low_104
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_104
NF10954A_low_104
[»] chr7 (5 HSPs)
chr7 (10-361)||(45341211-45341560)
chr7 (146-286)||(4548267-4548409)
chr7 (117-301)||(6011403-6011586)
chr7 (225-288)||(11622442-11622506)
chr7 (145-233)||(19432388-19432474)
[»] chr3 (4 HSPs)
chr3 (81-291)||(19800545-19800754)
chr3 (10-74)||(14258960-14259023)
chr3 (81-232)||(16018989-16019136)
chr3 (170-229)||(25387029-25387088)
[»] chr8 (7 HSPs)
chr8 (81-302)||(24819942-24820160)
chr8 (79-233)||(15061971-15062124)
chr8 (146-298)||(15662802-15662954)
chr8 (83-225)||(16723492-16723632)
chr8 (135-252)||(15550776-15550892)
chr8 (10-70)||(15061824-15061884)
chr8 (183-304)||(22502004-22502125)
[»] chr4 (5 HSPs)
chr4 (81-247)||(16673431-16673597)
chr4 (119-299)||(18448904-18449084)
chr4 (7-74)||(41806061-41806127)
chr4 (10-79)||(16673668-16673737)
chr4 (146-195)||(13933031-13933079)
[»] scaffold0035 (1 HSPs)
scaffold0035 (79-297)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (84-290)||(24134-24339)
[»] scaffold0338 (1 HSPs)
scaffold0338 (79-232)||(18545-18696)
[»] chr5 (2 HSPs)
chr5 (79-246)||(26058031-26058196)
chr5 (119-232)||(19079584-19079696)
[»] chr6 (5 HSPs)
chr6 (79-293)||(13123109-13123323)
chr6 (84-290)||(12331737-12331940)
chr6 (81-231)||(23846137-23846286)
chr6 (84-163)||(20891709-20891788)
chr6 (10-74)||(15483019-15483083)
[»] scaffold0001 (1 HSPs)
scaffold0001 (315-360)||(420420-420465)
[»] chr2 (2 HSPs)
chr2 (119-252)||(28579640-28579771)
chr2 (79-133)||(16592297-16592351)
[»] scaffold0086 (1 HSPs)
scaffold0086 (147-229)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 45341211 - 45341560
Alignment:
Q  10 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacc 109  Q
    ||||||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45341211 aatatctaaaatctcatacataaataaaaaacaattc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaact 45341308  T
Q  110 tgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaa 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341309 tgcacgtcgtctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaa 45341408  T
Q  210 atagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341409 atagcattcaaggatttcaagtatcacatatacacatgttcatcatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatca 45341508  T
Q  310 attttcatttcaacatcaagaggtcatcacatcaccaacaattaaattcatg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341509 attttcatttcaacatcaagaggtcatcacatcaccaacaattaaattcatg 45341560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 4548267 - 4548409
Alignment:
Q  146 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacat----ata 241  Q
    |||||||||||||||| ||| |||||| | ||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||  |||| ||    |||    
T  4548267 cggtcaaccaaacgactatt-aggggtgagataatattccacataatacaatataatcaaagaaa-agcattcaaggatttcaatcatcatatatagata 4548364  T
Q  242 cacatgttcattatcccataatactaacatcatgtgaatattatc 286  Q
     ||||| ||| ||||| |||||||| |||||||||||||||||||    
T  4548365 tacatgctcaatatcctataatactgacatcatgtgaatattatc 4548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 301
Target Start/End: Complemental strand, 6011586 - 6011403
Alignment:
Q  117 catctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcat 216  Q
    |||||||||||||| || |||||| ||  |||||||||||||||| | |||||||||| ||| || ||||||||| || |||||| || ||| ||| |||    
T  6011586 catctacaccatttttagaaatggtgaggcggtcaaccaaacgacaactgaggggttagataata-ttcacataaaaagatataagcatagatataacat 6011488  T
Q  217 tcaaggatttcaagtatcacatatacacatgttcattatcccat-aatactaacatcatgtgaatattatcttaaaatcaatcata 301  Q
    || | || ||||  ||||||||| | |||| ||||| || || | |||||||||||| | ||||||| ||||| ||  ||||||||    
T  6011487 tctacga-ttcacatatcacatacatacatattcatcattccttgaatactaacatcttatgaatatcatcttcaatccaatcata 6011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 11622506 - 11622442
Alignment:
Q  225 ttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt 288  Q
    ||||||||||||||||| |||||||||| | ||| | |||||||||||||| | |||||||||||    
T  11622506 ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcatataaatattatctt 11622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 19432474 - 19432388
Alignment:
Q  145 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 233  Q
    ||||||||||||||||| |  | || |||| ||| |||| || ||||||||||||||||||  ||||||||||||| ||||||||||||    
T  19432474 acggtcaaccaaacgactac-gtggagttagataatattccatataataaaatataatcaat-aaatagcattcaatgatttcaagtat 19432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 291
Target Start/End: Original strand, 19800545 - 19800754
Alignment:
Q  81 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 180  Q
    |||||| ||||||||| | |||||||||||||||||| | ||||||||| |||||||||||||  | ||||||||||| |||| ||  |||| | ||| |    
T  19800545 agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacaccatt-ataaaaatggcgaggcagtcaaccaaacaaccactggtgggtgagataat 19800643  T
Q  181 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 280  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||| | ||||||| ||||||| ||||    
T  19800644 attccacataataaaatctaatcaaagaaatagcattcaaggatttcaaataccacatatatacatgctcatcatcctagaatactatcatcatgcgaat 19800743  T
Q  281 attatcttaaa 291  Q
    |||||| ||||    
T  19800744 attatcataaa 19800754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 14258960 - 14259023
Alignment:
Q  10 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 74  Q
    ||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||| |||||    
T  14258960 aatatctcaaatctcatacataa-tagacaacaagtctcatcaataatataaatacataacataa 14259023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 16019136 - 16018989
Alignment:
Q  81 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 180  Q
    ||||||||||| ||| | |||||||||| |||||||| || |||||||||||| ||||||  |   ||||||||||| ||||||||  || ||| ||| |    
T  16019136 agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgggtaggtggtcaaccaaatgaccattg-tggtttatataat 16019038  T
Q  181 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 232  Q
    ||| || ||||||||| ||   || | |||||||||||||||||||||||||    
T  16019037 attccatataataaaacat--gcata-aaatagcattcaaggatttcaagta 16018989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 25387088 - 25387029
Alignment:
Q  170 ggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 229  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  25387088 ggttaaataacatttcacataataaaatataataaaggaaataacattcaaagatttcaa 25387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 302
Target Start/End: Complemental strand, 24820160 - 24819942
Alignment:
Q  81 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 180  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||| | | ||| |||| ||| |    
T  24820160 agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatggtgaggcggtcaaccaaacgacaact-aggagttagataat 24820063  T
Q  181 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 280  Q
    ||| |||||| ||||||| || || | |||||| |||||||||||||||  |||||||||| ||||| |||| |||| | |||||||||||| | |||||    
T  24820062 attccacatagtaaaataaaagcaca-aaatagaattcaaggatttcaaacatcacatatatacatgctcatcatcctagaatactaacatcgtatgaat 24819964  T
Q  281 attatcttaaaatcaatcataa 302  Q
    ||| || |||||||||| ||||    
T  24819963 attgtcataaaatcaatgataa 24819942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 15061971 - 15062124
Alignment:
Q  79 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 178  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||  ||||| |||    
T  15061971 caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactga-aggttagata 15062069  T
Q  179 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 233  Q
     |||| |||||||||||||||||||||  ||||  || |||||||||||||||||    
T  15062070 atattccacataataaaatataatcaagtaaatgacagtcaaggatttcaagtat 15062124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 298
Target Start/End: Complemental strand, 15662954 - 15662802
Alignment:
Q  146 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacaca 245  Q
    |||||||||||||||||| |  ||||||| ||| |||| ||||||| || ||| || || | ||||||||||| ||  |||||||||||||||||| |||    
T  15662954 cggtcaaccaaacgaccactagggggttagataatatt-cacataaaaagatacaagcacaaaaatagcattctagattttcaagtatcacatatataca 15662856  T
Q  246 tgttcatta-tcccataatactaacatcatgtgaatattatcttaaaatcaatc 298  Q
    || ||| || ||| | |||||||||||| | ||||||||||||| || ||||||    
T  15662855 tgctcaatattcctagaatactaacatcgtatgaatattatcttcaattcaatc 15662802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 16723492 - 16723632
Alignment:
Q  83 cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtat 182  Q
    ||||||||||||||||| ||||||  ||||||||  ||||||||||| ||| ||||||  |  |||| || |||||||||| |||  ||||| ||| |||    
T  16723492 cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgggtaggcggtaaatcaaacgaccaatga--ggttagataatat 16723589  T
Q  183 ttcacataataaaatataatcaaagaaatagcattcaaggatt 225  Q
    |||| || |||||||| |||||||| ||||| |||||| ||||    
T  16723590 ttcatatgataaaataaaatcaaagtaatagaattcaatgatt 16723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 15550892 - 15550776
Alignment:
Q  135 aaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatc 234  Q
    |||||| || || |||||||||||||||| | || ||||| ||| |||| ||||||| || ||||||||| | ||||||||||| |  |||||||| |||    
T  15550892 aaatggtgagacagtcaaccaaacgaccactaagaggttatataatatt-cacataaaaatatataatcacaaaaatagcattctataatttcaagaatc 15550794  T
Q  235 acatatacacatgttcat 252  Q
    ||||||| ||||| ||||    
T  15550793 acatatatacatgctcat 15550776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 15061824 - 15061884
Alignment:
Q  10 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagc 70  Q
    |||||||||||| ||| ||||||||| ||| ||||||||  |||||| |||||||||||||    
T  15061824 aatatctcaaatttcagacataaatagacagcaagtctcatcaataaaataaatacatagc 15061884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 304
Target Start/End: Complemental strand, 22502125 - 22502004
Alignment:
Q  183 ttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaata 281  Q
    ||||||||| || |||||| || | | ||| ||||| |||||| ||| ||||||||||| ||||| |||| || || | ||||||| |||||  ||||||    
T  22502125 ttcacataaaaatatataagcacaaatataacattctaggatt-caaatatcacatatatacatgctcatcattcctagaatactaccatcacatgaata 22502027  T
Q  282 ttatcttaaaatcaatcataaca 304  Q
    ||||||| || ||||||||||||    
T  22502026 ttatctttaattcaatcataaca 22502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 81 - 247
Target Start/End: Complemental strand, 16673597 - 16673431
Alignment:
Q  81 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 180  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||| || |||| | ||   | ||||||||||||||| || |  |||| ||| |    
T  16673597 agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccatttttagaaatagtgaggtgctcaaccaaacgaccactgggatgttagataat 16673498  T
Q  181 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatg 247  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16673497 attccacataataaaatttaatcaaagaaatagcattcaaggatttcaagtatcaaatatatacatg 16673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 299
Target Start/End: Original strand, 18448904 - 18449084
Alignment:
Q  119 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 218  Q
    |||||||||||| || |||||| ||  |||||||| ||||||||| |  ||||||| ||| |||| ||||||| ||  ||||| || | || |||||||     
T  18448904 tctacaccatttttataaatggtgaggcggtcaactaaacgaccactagggggttagataatatt-cacataaaaacgtataagcacaaaagtagcatta 18449002  T
Q  219 aaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaatattatcttaaaatcaatca 299  Q
     || ||||||||||||||||||  |||||  || ||| |  | |||||||||||||||||||||||||||| || |||||||    
T  18449003 tagaatttcaagtatcacatatttacatgcacaatattcttacaatactaacatcatgtgaatattatcttcaactcaatca 18449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 41806061 - 41806127
Alignment:
Q  7 aataatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 74  Q
    ||||||||||||||||||| |||||| || | |||||||||||||| |||||||||| ||||||||||    
T  41806061 aataatatctcaaatctcagacataa-tagataacaagtctcggcagtaatataaatgcatagcataa 41806127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 16673737 - 16673668
Alignment:
Q  10 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtccc 79  Q
    |||||||||||||| | ||||||||||||||||||| |  ||||||| ||||||||| | ||||||||||    
T  16673737 aatatctcaaatcttagacataaataaacaacaagttttagcaataacataaatacacaacataagtccc 16673668  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 13933031 - 13933079
Alignment:
Q  146 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaa 195  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||||||    
T  13933031 cggtcaaccaaacgaccactg-ggggttagataatatttcacataataaa 13933079  T

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Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 297
Target Start/End: Complemental strand, 71437 - 71223
Alignment:
Q  79 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 178  Q
    ||||||||||||||||||| |||||  | | |||||  | |||||| |||||||| ||||||  |  |||||||||||||||||| |||||| ||| |||    
T  71437 caagcactcacaagcaataagaacttgatcatgcacaccgtctacaacatttatacaaatgggtaggcggtcaaccaaacgaccagtgaggg-ttagata 71339  T
Q  179 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtga 278  Q
     |||| |||||||||| ||||||||||||||   ||||||||| ||||||||||| ||||| | |||| ||||| |||| | ||||||||||||||| ||    
T  71338 atattccacataataagatataatcaaagaa---gcattcaagaatttcaagtattacatacatacatattcatcatcctagaatactaacatcatgcga 71242  T
Q  279 atattatcttaaaatcaat 297  Q
    |||||||| |||| |||||    
T  71241 atattatcctaaactcaat 71223  T

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Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 290
Target Start/End: Complemental strand, 24339 - 24134
Alignment:
Q  84 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 183  Q
    |||||||| ||||| |  ||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||||| ||| |||  |||    
T  24339 actcacaaacaataagttctcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactgaggg-ttagataacatt 24241  T
Q  184 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 282  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  || ||| |||| ||||| | ||| | ||||||||||||||||||||||    
T  24240 tcacataataaaatataatcata-aaataacattcaaggatttcaagtatagcacatatacatattcatcactcctagaatactaacatcatgtgaatat 24142  T
Q  283 tatcttaa 290  Q
    ||||||||    
T  24141 tatcttaa 24134  T

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Target: scaffold0338 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 18696 - 18545
Alignment:
Q  79 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 178  Q
    |||||||||||||| |||| |||||||| | |||||| | | ||||||||| ||| ||||||  | ||||||||||||||||||| ||| |||||| |||    
T  18696 caagcactcacaagaaataagaactcaatcatgcacgccgtttacaccattcatacaaatgggtagacggtcaaccaaacgaccactga-gggttagata 18598  T
Q  179 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 232  Q
     |||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  18597 atattccacataataaaatataatcata-aaacagcattcaaggatttcaagta 18545  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 26058031 - 26058196
Alignment:
Q  79 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 178  Q
    |||||||| | |||||||| |||||||| | |||||  | ||||||||||||||| ||||||  |  || ||||||||| ||||| | |||||||| |||    
T  26058031 caagcacttataagcaataagaactcaatcatgcactccgtctacaccatttatacaaatgggtaggcgatcaaccaaatgaccact-aggggttagata 26058129  T
Q  179 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacat 246  Q
     |||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | | ||||||||    
T  26058130 atattccacataataaaatataatcata-aaatatcattcaaggatttcaagtattatacatacacat 26058196  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 19079696 - 19079584
Alignment:
Q  119 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 218  Q
    |||||||||||| ||||||||| ||  ||||||||||||| |||| || | ||||| |||  | ||||||||| || |||||| || ||||||||||||     
T  19079696 tctacaccatttttaaaaatggtgagccggtcaaccaaacaaccactgggaggttagataaca-ttcacataaaaagatataagcacagaaatagcatta 19079598  T
Q  219 aaggatttcaagta 232  Q
     ||||||| |||||    
T  19079597 taggatttaaagta 19079584  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 293
Target Start/End: Complemental strand, 13123323 - 13123109
Alignment:
Q  79 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 178  Q
    ||||||||||||||||||| ||| ||||   |||||| | ||||||||||| ||| ||||||  || ||| ||| ||||||| || ||| |||||| ||     
T  13123323 caagcactcacaagcaataagaaatcaattttgcacgccgtctacaccattcatacaaatgggtaagcggccaatcaaacgatcactga-gggttagatt 13123225  T
Q  179 gtatttcacataataaaatataatc-aaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgt 276  Q
     || ||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||  ||| ||  ||||| |||| | ||  | ||||||||||| ||||    
T  13123224 ata-ttcacgtaataaaatataatcaaaataaatagcattcaatgatttcaattaatacacatgtacatgctcatcattcgtaaaatactaacataatgt 13123126  T
Q  277 gaatattatcttaaaat 293  Q
    |||||||||||| ||||    
T  13123125 gaatattatcttcaaat 13123109  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 290
Target Start/End: Complemental strand, 12331940 - 12331737
Alignment:
Q  84 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 183  Q
    |||||||||||||| ||||| || | | || ||| ||||||||||| ||| ||||||  |  |||||||| ||||||||| |  ||||||| ||  ||||    
T  12331940 actcacaagcaataagaacttaatcatacatgtcgtctacaccattcatacaaatgggtaggcggtcaactaaacgaccact--ggggttagattatatt 12331843  T
Q  184 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 282  Q
     ||||||||||||||||| || | |||||| |||| |||||||  |||||  || ||| |||| ||||| | ||| | |||||||||||||| |||||||    
T  12331842 ccacataataaaatataaacata-aaatagaattctaggattt-tagtatagcacatatacatattcatcactcctagaatactaacatcatatgaatat 12331745  T
Q  283 tatcttaa 290  Q
    ||||||||    
T  12331744 tatcttaa 12331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 23846286 - 23846137
Alignment:
Q  81 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 180  Q
    ||||||||||| ||||| ||| |||||| |||| |  ||||||||||||| | ||||| |  |  |||| ||||||||||||| ||  |||| | ||| |    
T  23846286 agcactcacaatcaataagaaatcaaacatgcatgctatctacaccattttttaaaatagtaatgcggttaaccaaacgaccactggagggtgagataat 23846187  T
Q  181 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagt 231  Q
    ||||||||| ||||||||||| || | ||||| |||||| |||||||||||    
T  23846186 atttcacatgataaaatataaacata-aaataacattcatggatttcaagt 23846137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 20891709 - 20891788
Alignment:
Q  84 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgacca 163  Q
    |||||||||||||| ||| |||| | |||||| | ||||||||||| ||| ||||||  |  ||||||||||||||||||    
T  20891709 actcacaagcaataagaaatcaatcatgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgacca 20891788  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 15483083 - 15483019
Alignment:
Q  10 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 74  Q
    |||||||||||||||| |||||| || |||| ||||||| |||  || ||||||||||| |||||    
T  15483083 aatatctcaaatctcaaacataactagacaataagtctcagcagcaacataaatacataacataa 15483019  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 420420 - 420465
Alignment:
Q  315 catttcaacatcaagaggtcatcacatcaccaacaattaaattcat 360  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  420420 catttcaacatcaagaggtcatcacatcaccaataattaaattcat 420465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 28579771 - 28579640
Alignment:
Q  119 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 218  Q
    ||||||| |||| || |||||| || | |||||||||||||||||||| ||||||| ||| || |||||| || || |||||| || | | ||||||||     
T  28579771 tctacactatttttacaaatggagagatggtcaaccaaacgaccattgtggggttagataata-ttcacacaaaaagatataagcacaaatatagcattt 28579673  T
Q  219 aaggatttcaagtatcacatatacacatgttcat 252  Q
     |||| ||||| ||||||||||| ||||| ||||    
T  28579672 tagga-ttcaaatatcacatatatacatgctcat 28579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
Q  79 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata 133  Q
    ||||||||||| ||||||| |||||||| |||||||| | ||| |||||||||||    
T  16592351 caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata 16592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 11379 - 11300
Alignment:
Q  147 ggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 229  Q
    |||||||||||||| || || |||||||||||||||| |||| ||| ||| ||||||||| ||| || |||||||||||||||    
T  11379 ggtcaaccaaacgatcactg-ggggttaaatagtattccacacaat-aaacataatcaaataaa-agtattcaaggatttcaa 11300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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