View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_11 (Length: 474)

Name: NF10954A_low_11
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_11
NF10954A_low_11
[»] chr6 (5 HSPs)
chr6 (320-383)||(10070299-10070362)
chr6 (43-99)||(10069915-10069971)
chr6 (292-329)||(5172125-5172162)
chr6 (281-326)||(26320585-26320630)
chr6 (290-326)||(32149141-32149177)
[»] chr4 (8 HSPs)
chr4 (285-326)||(241406-241447)
chr4 (281-326)||(37463516-37463561)
chr4 (279-326)||(54857637-54857684)
chr4 (285-327)||(9913897-9913939)
chr4 (285-326)||(10303533-10303574)
chr4 (290-327)||(31604314-31604351)
chr4 (285-326)||(35287529-35287570)
chr4 (290-326)||(31780748-31780784)
[»] chr2 (6 HSPs)
chr2 (281-326)||(21497661-21497706)
chr2 (285-327)||(3752796-3752838)
chr2 (285-326)||(17736791-17736832)
chr2 (281-326)||(32957565-32957610)
chr2 (290-326)||(4056793-4056829)
chr2 (290-326)||(27314870-27314906)
[»] chr1 (5 HSPs)
chr1 (285-326)||(29739335-29739376)
chr1 (285-326)||(13673543-13673584)
chr1 (289-326)||(21015964-21016001)
chr1 (281-326)||(26498055-26498100)
chr1 (281-326)||(50595905-50595950)
[»] chr7 (7 HSPs)
chr7 (279-326)||(46207752-46207799)
chr7 (284-326)||(13044164-13044206)
chr7 (285-326)||(580948-580989)
chr7 (285-326)||(47589575-47589616)
chr7 (290-326)||(13955483-13955519)
chr7 (287-327)||(32862619-32862659)
chr7 (282-326)||(35666298-35666342)
[»] chr3 (5 HSPs)
chr3 (290-325)||(53705650-53705685)
chr3 (285-326)||(7868720-7868761)
chr3 (285-326)||(52575945-52575986)
chr3 (290-326)||(13800670-13800706)
chr3 (290-326)||(41737799-41737835)
[»] chr5 (2 HSPs)
chr5 (285-327)||(22619872-22619914)
chr5 (290-326)||(18391603-18391639)
[»] scaffold0098 (1 HSPs)
scaffold0098 (285-326)||(5423-5464)
[»] scaffold0006 (1 HSPs)
scaffold0006 (285-326)||(171157-171198)
[»] scaffold0072 (1 HSPs)
scaffold0072 (290-326)||(25698-25734)
[»] chr8 (3 HSPs)
chr8 (290-326)||(9656019-9656055)
chr8 (290-326)||(32878664-32878700)
chr8 (281-321)||(35103100-35103140)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 10070299 - 10070362
Alignment:
Q  320 aaaatatattatcatgagaatggaggtttcttcatcgatatctaaatggatgctaagaactgat 383  Q
    |||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  10070299 aaaacatattatcatgaaaatagaggtttctttatcgatatctaaatggatgctaagaactgat 10070362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 10069915 - 10069971
Alignment:
Q  43 cccattaaaatgcagtaatgcgatatacagtgagtgcaacaatcacgaacggatcaa 99  Q
    ||||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  10069915 cccattaaaatacagtaatgctatatacaacgagtgcaacaatcacgaacggatcaa 10069971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 5172125 - 5172162
Alignment:
Q  292 cttagctcggttggtaagaacaatgcataaaatatatt 329  Q
    |||||||||||||||| | |||||||||||||||||||    
T  5172125 cttagctcggttggtatggacaatgcataaaatatatt 5172162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 26320630 - 26320585
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||| |||||||||| ||||||| | ||||||||||||||||    
T  26320630 gtcatcgtgagcttagctcagttggtatggacaatgcataaaatat 26320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 32149141 - 32149177
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  32149141 agcttagctcagttggtaagaacaatgcataatatat 32149177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 241447 - 241406
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  241447 tcgtaagcttagctcggttggtatgaacaatgcataaaatat 241406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 37463516 - 37463561
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||    
T  37463516 gtcatcgtgagcttagctcggttggtatgaacaatgcataatatat 37463561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 54857684 - 54857637
Alignment:
Q  279 cggtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    ||||| |||| ||||||||||||||||||  |||||||||||||||||    
T  54857684 cggtcctcgtgagcttagctcggttggtataaacaatgcataaaatat 54857637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 9913897 - 9913939
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatata 327  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  9913897 tcgtgagcttagctcagttggtatgaacaatgcataaaatata 9913939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 10303574 - 10303533
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  10303574 tcgtgagcttagctcagttggtaaggacaatgcataaaatat 10303533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 31604351 - 31604314
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatata 327  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  31604351 agcttaactcagttggtaagaacaatgcataaaatata 31604314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 35287570 - 35287529
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  35287570 tcgtgagcttagctcagttggtatgaacaatgcataaaatat 35287529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 31780748 - 31780784
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  31780748 agcttagctcagttggtaaggacaatgcataaaatat 31780784  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 21497661 - 21497706
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||    
T  21497661 gtcatcgtgagcttaactcggttggtaagaacaatgcataatatat 21497706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 3752838 - 3752796
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatata 327  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  3752838 tcgtgagcttagctcggttgttatgaacaatgcataaaatata 3752796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 17736791 - 17736832
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  17736791 tcgtgagcttagctcagttggtatgaacaatgcataaaatat 17736832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 32957610 - 32957565
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||| || ||||||||||||||| ||||||||||||| ||||    
T  32957610 gtcatcgtgagtttagctcggttggtatgaacaatgcataatatat 32957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 4056793 - 4056829
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  4056793 agcttagctcggttggtaaggacaatgcataatatat 4056829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 27314870 - 27314906
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  27314870 agcttaactcagttggtaagaacaatgcataaaatat 27314906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 29739335 - 29739376
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  29739335 tcgttagcttagctcagttggtaaggacaatgcataaaatat 29739376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 13673543 - 13673584
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  13673543 tcgtgagcttagctcggttggtttgaacaatgcataaaatat 13673584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 21015964 - 21016001
Alignment:
Q  289 tagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  21015964 tagcttagctcagttggtaagaacaatgcataatatat 21016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 26498055 - 26498100
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||| |||||||||| ||||||| | ||||||||||||||||    
T  26498055 gtcatcgtgagcttagctcagttggtacggacaatgcataaaatat 26498100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 50595950 - 50595905
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||||    
T  50595950 gtcatcgtgagcttagctcaattggtatgaacaatgcataaaatat 50595905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 46207752 - 46207799
Alignment:
Q  279 cggtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  46207752 cggtcctcgtgagcttagctcagttggtatgaacaatgcataaaatat 46207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 13044206 - 13044164
Alignment:
Q  284 atcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||    
T  13044206 atcgtgagcttagctcagttggtaaggacaatgcataaaatat 13044164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 580989 - 580948
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  580989 tcgtgagcttagctcggttggtatggacaatgcataaaatat 580948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 47589616 - 47589575
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  47589616 tcgtgagcttagctcagttggtatgaacaatgcataaaatat 47589575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 13955483 - 13955519
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  13955483 agcttagctcagttggtatgaacaatgcataaaatat 13955519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 32862619 - 32862659
Alignment:
Q  287 gttagcttagctcggttggtaagaacaatgcataaaatata 327  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  32862619 gttagcttaactcagttggtaagaacaacgcataaaatata 32862659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 35666298 - 35666342
Alignment:
Q  282 tcatcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    ||||||| |||||| ||||||||||||| ||||||||||| ||||    
T  35666298 tcatcgtgagcttaactcggttggtaaggacaatgcataatatat 35666342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 53705685 - 53705650
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaata 325  Q
    |||||||||| |||||||||||||||||||||||||    
T  53705685 agcttagctcagttggtaagaacaatgcataaaata 53705650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 7868720 - 7868761
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  7868720 tcgtgagcttagctcagttggtaagaacaatgcataatatat 7868761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 52575945 - 52575986
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  52575945 tcgtaagcttagctcagttggtatgaacaatgcataaaatat 52575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 13800670 - 13800706
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  13800670 agcttagctcagttggtaagaacaatgcataatatat 13800706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 41737799 - 41737835
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  41737799 agcttagctcagttggtaaggacaatgcataaaatat 41737835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 22619872 - 22619914
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatata 327  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  22619872 tcgtgagcttagctcagttggtatgaacaatgcataaaatata 22619914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 18391603 - 18391639
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  18391603 agcttagctcagttggtaaggacaatgcataaaatat 18391639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 5423 - 5464
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  5423 tcgtgagcttagctcagttggtaagaacaatgcataatatat 5464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 171157 - 171198
Alignment:
Q  285 tcgttagcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  171157 tcgtgagcttagctcggttggtttgaacaatgcataaaatat 171198  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 25698 - 25734
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  25698 agcttagctcagttggtaagaacaatgcataatatat 25734  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 9656055 - 9656019
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  9656055 agcttagctcagttggtaaggacaatgcataaaatat 9656019  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 32878664 - 32878700
Alignment:
Q  290 agcttagctcggttggtaagaacaatgcataaaatat 326  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  32878664 agcttagctcagttggtaagaacaatgcataatatat 32878700  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 35103100 - 35103140
Alignment:
Q  281 gtcatcgttagcttagctcggttggtaagaacaatgcataa 321  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  35103100 gtcatcgtgagcttagctcagttggtatgaacaatgcataa 35103140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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