View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_110 (Length: 358)

Name: NF10954A_low_110
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_110
NF10954A_low_110
[»] chr1 (10 HSPs)
chr1 (71-338)||(11620030-11620297)
chr1 (74-338)||(16584669-16584935)
chr1 (71-333)||(1161254-1161507)
chr1 (71-320)||(8084099-8084348)
chr1 (72-210)||(18461222-18461362)
chr1 (136-338)||(42009781-42009999)
chr1 (71-170)||(25785863-25785962)
chr1 (162-298)||(25787286-25787428)
chr1 (69-119)||(42009995-42010045)
chr1 (72-142)||(11911698-11911768)
[»] chr8 (11 HSPs)
chr8 (71-338)||(44223132-44223401)
chr8 (71-333)||(7956150-7956414)
chr8 (76-230)||(35948944-35949098)
chr8 (71-338)||(17722206-17722494)
chr8 (256-338)||(35949099-35949181)
chr8 (212-317)||(25808103-25808210)
chr8 (72-119)||(34760832-34760879)
chr8 (72-265)||(3767530-3767729)
chr8 (210-314)||(25343933-25344039)
chr8 (210-306)||(34760653-34760749)
chr8 (72-134)||(9040525-9040587)
[»] chr2 (7 HSPs)
chr2 (69-327)||(31111523-31111783)
chr2 (81-338)||(4638276-4638550)
chr2 (72-293)||(13852130-13852342)
chr2 (78-297)||(36009278-36009504)
chr2 (151-325)||(30340563-30340745)
chr2 (83-317)||(38607090-38607332)
chr2 (72-211)||(5526329-5526470)
[»] chr4 (5 HSPs)
chr4 (84-305)||(28319128-28319351)
chr4 (69-250)||(24466202-24466391)
chr4 (71-334)||(23107711-23107985)
chr4 (71-185)||(4413566-4413680)
chr4 (225-314)||(38388177-38388268)
[»] chr5 (6 HSPs)
chr5 (71-338)||(16746238-16746495)
chr5 (77-230)||(19947826-19947981)
chr5 (72-338)||(31896009-31896258)
chr5 (71-135)||(16746550-16746614)
chr5 (6-81)||(31895923-31895998)
chr5 (210-330)||(17770471-17770592)
[»] chr7 (7 HSPs)
chr7 (69-338)||(7995055-7995340)
chr7 (71-255)||(7352258-7352443)
chr7 (71-255)||(46993360-46993552)
chr7 (71-249)||(39695194-39695370)
chr7 (72-146)||(11727327-11727401)
chr7 (210-324)||(32971489-32971605)
chr7 (99-182)||(2197633-2197716)
[»] scaffold0879 (1 HSPs)
scaffold0879 (69-250)||(467-656)
[»] scaffold0565 (1 HSPs)
scaffold0565 (72-319)||(1667-1917)
[»] chr3 (6 HSPs)
chr3 (72-210)||(46655628-46655768)
chr3 (246-338)||(2095504-2095595)
chr3 (210-317)||(11503138-11503247)
chr3 (254-317)||(11690034-11690097)
chr3 (72-119)||(44682023-44682070)
chr3 (210-296)||(44285802-44285890)
[»] scaffold0070 (2 HSPs)
scaffold0070 (210-314)||(33982-34088)
scaffold0070 (212-314)||(14007-14111)
[»] chr6 (3 HSPs)
chr6 (210-265)||(9826996-9827051)
chr6 (210-296)||(5416284-5416370)
chr6 (210-330)||(26880030-26880155)
[»] scaffold0564 (1 HSPs)
scaffold0564 (213-275)||(6564-6626)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 71 - 338
Target Start/End: Original strand, 11620030 - 11620297
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  11620030 gaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttactaata 11620129  T
Q  171 ttatcctacctcacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttac 270  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11620130 ttatcctacctcacaaacttatggttaaacccaaaattaaacatgaaatactttttaatcaattcactttctcccatcttcatctcatctcatcagttac 11620229  T
Q  271 actctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11620230 actctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 11620297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 338
Target Start/End: Complemental strand, 16584935 - 16584669
Alignment:
Q  74 accgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatatta 173  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||| |||||||  || ||||||||||||||||||||||    
T  16584935 accgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgataaccaaactccttattttactaatatta 16584836  T
Q  174 tcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttaca 271  Q
    || |||||||||  |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||| | |    
T  16584835 tcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatccattcactttctctaatcttcatctcatctcatcagtcaga 16584736  T
Q  272 ctctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    || ||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  16584735 ctatttcatttctacttaaaaagaaaccctagccgtcaaccacaccaagcccattgttcatcgccac 16584669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 71 - 333
Target Start/End: Complemental strand, 1161507 - 1161254
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  1161507 gaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaata 1161408  T
Q  171 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtt 268  Q
    |||||||||||  ||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||| ||||           ||| |||||||||||     
T  1161407 ttatcctacctcacacaaacttatggttcagcccaaaattaaacataaaatattttttaatccattcactttc-----------tcttatctcatcagtc 1161319  T
Q  269 acactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatc 333  Q
    | ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  1161318 agactctttcatttctactaaaaaagaaaccctagtcgtcaaccacaccaaacccattgttcatc 1161254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 71 - 320
Target Start/End: Original strand, 8084099 - 8084348
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||     
T  8084099 gaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgataaccacactccttattttactaatc 8084198  T
Q  171 ---ttatcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatca 265  Q
       |||||||||||||||  |||| |||||||  | ||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||      |    
T  8084199 catttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatctattcactttctctcatcttcatctcatt-----a 8084293  T
Q  266 gttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaa 320  Q
    || | |||||| |||| ||| ||||||||||||||||||||| ||||||||||||    
T  8084294 gtcagactcttccatttctattaaaaaagaaaccctagccgtcaaccacaccaaa 8084348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 18461222 - 18461362
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||| ||||||    
T  18461222 aaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcattaatttattaatat 18461321  T
Q  172 tatcctacct--cacaaacttatggttaaacccaaaattaa 210  Q
    ||||| ||||  ||||||||||||||||| |||||||||||    
T  18461322 tatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 136 - 338
Target Start/End: Complemental strand, 42009999 - 42009781
Alignment:
Q  136 atccgatgatactcacactccttattttactaatattatcctacctcaca--aacttatggttaaacccaaaattaaa-----cataaaatacttttta- 227  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||||||  ||||||||||||  || |||||||||     |||||||||||||||      
T  42009999 atccgatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaattaaagtcaacataaaatacttttttt 42009900  T
Q  228 atcaattcaatttctcccatctt--------catctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaa 319  Q
    ||| ||||| |||||| ||| ||        ||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  42009899 atccattcattttctctcattttttatctgacatctcatctcttcagtcagactcttacatttctactaaaaaagaaaccctagccgttaaccacaccaa 42009800  T
Q  320 acccattgttcatcgccac 338  Q
    || |||||||||| |||||    
T  42009799 actcattgttcattgccac 42009781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 25785863 - 25785962
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  25785863 gaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttactaata 25785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 25787286 - 25787428
Alignment:
Q  162 ttactaatattatcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaat-----caattcaatttctcccatcttcatc 254  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||||||||||| ||||| ||||||||     || |||| |||||| |||| |||||    
T  25787286 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatc-tcatc 25787384  T
Q  255 tcatctcatcagttacactctttcattcctactaaaaaagaaac 298  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||    
T  25787385 tcatctcatcagtcagactctttcatttctactaaaaaagaaac 25787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 42010045 - 42009995
Alignment:
Q  69 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccg 119  Q
    |||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  42010045 ttgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 11911698 - 11911768
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgat 142  Q
    |||||||||||||||| ||| |||| |||||||| ||||||| |||||   ||| |||||||||| |||||    
T  11911698 aaaccgatctagtttgatttagttcttggtttttaattttgaaatccgatgaaccgatgaaccaaaccgat 11911768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 71 - 338
Target Start/End: Complemental strand, 44223401 - 44223132
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    |||||| |||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||    
T  44223401 gaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacaaata 44223302  T
Q  171 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatac-tttttaatcaattcaatttctcccatcttcatctcatctcatcagt 267  Q
    |||||||||||  ||||||||||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||| | |||||||| |    
T  44223301 ttatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaatccattcactttctctcatcttcatcccgtctcatcaat 44223202  T
Q  268 tacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    || ||||||||||| |||||||||||||||| | |||||| ||||||||||||| || |||||||||||||    
T  44223201 tatactctttcatttctactaaaaaagaaactcaagccgtcaaccacaccaaactca-tgttcatcgccac 44223132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 333
Target Start/End: Complemental strand, 7956414 - 7956150
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||  || |||||||||||||||||||    
T  7956414 gaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgataaccatactccttattttactaata 7956315  T
Q  171 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtt 268  Q
    |||||||||||  ||||||||||||||||  ||||||||||||||||||||| ||||||||  ||||  |||||| ||| |||||||||||||||||||     
T  7956314 ttatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaatacattctctttctctcatattcatctcatctcatcagtc 7956215  T
Q  269 acactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatc 333  Q
    | ||||||| ||| |||||||||||||||| ||||  || ||||||||||||| |||||||||||    
T  7956214 aaactctttgatttctactaaaaaagaaactctagttgtcaaccacaccaaactcattgttcatc 7956150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 35948944 - 35949098
Alignment:
Q  76 cgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatc 175  Q
    ||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  35948944 cgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgataacaacattccttattttactaatattatc 35949043  T
Q  176 ctacctcacaaacttatggttaaacccaaaattaaacataaaatactttttaatc 230  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  35949044 ctacctcacaaacttatggttaggcccaaaattaaacataaaatactttttaatc 35949098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 338
Target Start/End: Complemental strand, 17722494 - 17722206
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||  ||||||| ||| ||||||||||    
T  17722494 gaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgataaccacactcattactttactaata 17722395  T
Q  171 tta--------tcctacct--cacaaacttatggttaaacccaaaattaaacata----------aaatactttttaatcaattcaatttctcccatctt 250  Q
    |||        ||||||||  |||| ||| |||||||  ||||||||||||||||          ||||| ||||||||| ||||| ||| || ||||||    
T  17722394 ttatcataaattcctacctcacacatactcatggttaggcccaaaattaaacataaaataattttaaataatttttaatccattcactttatctcatctt 17722295  T
Q  251 catctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaa----ccacaccaaacccattgttcatcgccac 338  Q
    ||   |||  ||| ||| | ||||||||||| ||||||||||| ||||||||||||| ||    ||||||||||||||||||||||| ||||    
T  17722294 ca---cataccattagtcagactctttcatttctactaaaaaataaaccctagccgtcaacctgccacaccaaacccattgttcatcaccac 17722206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 35949099 - 35949181
Alignment:
Q  256 catctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    ||||| |||||| | ||||||||||| |||||| |||||||||| || |||| |||||||||||||| |||||||||||||||    
T  35949099 catcttatcagtcagactctttcatttctactagaaaagaaaccataaccgtcaaccacaccaaaccaattgttcatcgccac 35949181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 25808210 - 25808103
Alignment:
Q  212 cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgtta 309  Q
    |||||| ||||  |||||| ||||| ||||||||||| |||||| ||||||||| | | ||||  ||||||| ||||||||| || |||||||||| | |    
T  25808210 cataaagtactacttaatccattcactttctcccatcgtcatctaatctcatcactcagactcgatttcatttctactaaaataggaaccctagccatca 25808111  T
Q  310 accacacc 317  Q
    ||||||||    
T  25808110 accacacc 25808103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 34760879 - 34760832
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccg 119  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 3767729 - 3767530
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||    ||| |||||||| | |||||| ||  | ||||||  |||||| ||||||    
T  3767729 aaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaatat 3767630  T
Q  172 tatcctacctcacaaac-ttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatc 264  Q
    |||||   |||||| ||  |||| |||||| ||||||||      ||||||||||  |  |||||| ||||| ||||||||||  |||||||||||||||    
T  3767629 tatcccttctcacacacactatgattaaactcaaaattaaagtccaacataaaattatccttaatccattcactttctcccat-atcatctcatctcatc 3767531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 25344039 - 25343933
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgt 307  Q
    |||||||| ||||  |||||| ||||| ||||||||||| ||||||||| |||||| | | ||||  ||||||| ||||||||| |  |||||||||| |    
T  25344039 aacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcactcagactcgatttcatttctactaaaataagaaccctagccat 25343940  T
Q  308 taaccac 314  Q
     ||||||    
T  25343939 caaccac 25343933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 34760749 - 34760653
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccg 306  Q
    |||||||||||||  ||||||||| || ||||||| ||| ||||||||||||||||  || ||||  ||||||| ||||| |||||||||| |||||||    
T  34760749 aacataaaatactcattaatcaat-cactttctccgatcatcatctcatctcatcacatagactctatttcatttctact-aaaaagaaacactagccg 34760653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 9040525 - 9040587
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaacc 134  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||   ||||| ||||||||    
T  9040525 aaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 69 - 327
Target Start/End: Original strand, 31111523 - 31111783
Alignment:
Q  69 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 168  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| | |||||  |||||| |||||||||||||    
T  31111523 ttgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatctggtgataaccacacttcttattttactaa 31111622  T
Q  169 tattatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcag 266  Q
    |||||||||||||  |||||| |||||||||  | |||||||||| |||||||||||||||||  ||||| |||||| |||||||||||||| | || ||    
T  31111623 tattatcctacctcacacaaaattatggttaggcgcaaaattaaatataaaatactttttaattcattcactttctctcatcttcatctcatttaattag 31111722  T
Q  267 ttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattg 327  Q
    | | ||||||||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  31111723 tcagactctttcatttctactaagaaagaaaccctagtcgtcaaccataccaaacccattg 31111783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 81 - 338
Target Start/End: Original strand, 4638276 - 4638550
Alignment:
Q  81 tagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactcctta----ttttactaatattatcc 176  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||    |||||||||||||||||    
T  4638276 tagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttaattcttttactaatattatcc 4638375  T
Q  177 tac-------ctcacaaacttatggttaaacccaaaattaaa------cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcat 263  Q
    | |       | |||||| ||||||||| |||||||||||||      | |||| ||||||| |||| ||||| ||| ||  ||| ||||||||||||||    
T  4638376 tcctcacactcacacaaaattatggttagacccaaaattaaagtccaacttaaactacttttcaatccattcactttttctaatcctcatctcatctcat 4638475  T
Q  264 cagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
     ||| | ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  4638476 aagtcagactctttcatttctactaaaaaagaaaccctatccgtcaaccacaccaaacccattgttcatcgccac 4638550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 72 - 293
Target Start/End: Complemental strand, 13852342 - 13852130
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| | |||||  |||||||||||||||| ||||||    
T  13852342 aaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttgataaccacactccttattttattaatat 13852243  T
Q  172 tatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtta 269  Q
    |||| |||||  |||||||||| |||||   |||||||||||||||||||| ||||||||| ||||| ||||           |||||||||||||||||    
T  13852242 tatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactttc-----------tctcatctcatcagtta 13852154  T
Q  270 cactctttcattcctactaaaaaa 293  Q
     ||||||||||| |||||||||||    
T  13852153 gactctttcatttctactaaaaaa 13852130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 78 - 297
Target Start/End: Original strand, 36009278 - 36009504
Alignment:
Q  78 atctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcct 177  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatcct 36009377  T
Q  178 acct----------cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagt 267  Q
    || |          |||||| | |||||||   |||||||||||||||||||| ||||||||| ||||| |||||| ||||||||   |||||||||| |    
T  36009378 acatttctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatccattcactttctctcatcttca---catctcatcatt 36009474  T
Q  268 tacactctttcattcctactaaaaaagaaa 297  Q
     | ||||||||||| |||||||||||||||    
T  36009475 catactctttcatttctactaaaaaagaaa 36009504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 30340563 - 30340745
Alignment:
Q  151 cactccttattttactaatattatcctacctcacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcc 244  Q
    |||||| |||||||||||||||||||  ||||||| ||||||| ||| ||| |||||||      ||||||||||||| ||| ||  ||||| |||||||    
T  30340563 cactccctattttactaatattatccctcctcacacacttatgattagacctaaaattaaagttcaacataaaatactcttttattcattcactttctcc 30340662  T
Q  245 catcttcatctcatctcat--cagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccat 325  Q
    |||  ||||| ||||||||  |    || || ||||||| || |||||||||||||||||||| | ||||||||| |||||||    
T  30340663 cattatcatcacatctcattcctcggactctatttcatttcttctaaaaaagaaaccctagccatcaaccacacctaacccat 30340745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 317
Target Start/End: Original strand, 38607090 - 38607332
Alignment:
Q  83 gtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcctacctc 182  Q
    ||||||||  |||| ||||||||||||||||||||| | |||| |||||||| ||  |||| ||  |||||||   ||||||||||| ||||||  ||||    
T  38607090 gtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactcgccattttactaatgttatccctcctc 38607189  T
Q  183 ac------aaacttatggttaaacccaaaatta-----aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttaca 271  Q
    ||      | ||||||| |||  ||||||||||     ||||||||||||| ||||||| ||||| ||| || |||| ||||||||||    | |  ||     
T  38607190 acacgcaaacacttatgattaggcccaaaattaagtccaacataaaatactatttaatccattcattttatctcatcatcatctcatc---accgagact 38607286  T
Q  272 ctctttcattcctactaaaaaagaaaccctagccgttaaccacacc 317  Q
    || ||| ||| || |||||||||||||||||| |||||||||||||    
T  38607287 ctattttatttcttctaaaaaagaaaccctagtcgttaaccacacc 38607332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 5526329 - 5526470
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    |||||||||||||||||||  ||||   |||||| ||||||||||||    ||| |||||||| | |||||| || || ||||||  |||||| || |||    
T  5526329 aaaccgatctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgatgctaatctcactccccattttagtattat 5526428  T
Q  172 tatcctacct--cacaaacttatggttaaacccaaaattaaa 211  Q
    |||||  |||  |||| ||||||| |||||| ||||||||||    
T  5526429 tatccctccttacacacacttatgattaaactcaaaattaaa 5526470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 84 - 305
Target Start/End: Complemental strand, 28319351 - 28319128
Alignment:
Q  84 tttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcctacctca 183  Q
    |||||||| |||||||||||||||||| ||||| |||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  28319351 tttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctca 28319252  T
Q  184 ca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactctttcatt 281  Q
    ||  ||||||||||||  ||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||| | |||||||| ||    
T  28319251 cacaaacttatggttaggcccaaaattaaacataaaatattttttaatcaattcactttctctcattttcatctcatctcatcagtcagactctttcttt 28319152  T
Q  282 cctactaaaaaagaaaccctagcc 305  Q
     ||||||||| |||||||||||||    
T  28319151 tctactaaaagagaaaccctagcc 28319128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 24466391 - 24466202
Alignment:
Q  69 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 168  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  24466391 ttgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 24466292  T
Q  169 tattatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatctt 250  Q
    |||||||||||||  ||||||||||||||||  | ||||||||      ||||||||||||||||||||| ||||| |||||| ||||||    
T  24466291 tattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatctt 24466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 334
Target Start/End: Complemental strand, 23107985 - 23107711
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaacc----aatccgatgatactcacactccttattttact 166  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||    ||||||||||||  || |||||||||||||||    
T  23107985 gaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccgatgataaccatactccttattttact 23107886  T
Q  167 aatattatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctc------ccatcttca 252  Q
    |||||||||||||||  ||||||||||||||||  | ||||||||      ||||||||||||||||||||| ||||| ||||||       ||||||||    
T  23107885 aatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctaatcatcatcttca 23107786  T
Q  253 tctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcg 334  Q
    |||||||||||| || |       ||||| |||| || ||||||| ||||||||| |||| || |||||||| |||||||||    
T  23107785 tctcatctcatcggtca-------tcatttctaccaagaaagaaatcctagccgtcaaccgcatcaaacccaatgttcatcg 23107711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 4413566 - 4413680
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||    
T  4413566 gaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgataatcacactccttattttactagta 4413665  T
Q  171 ttatcctacctcaca 185  Q
    |||||||||||||||    
T  4413666 ttatcctacctcaca 4413680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 38388177 - 38388268
Alignment:
Q  225 ttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgttaaccac 314  Q
    |||||||||||| ||||||| ||| |||||||||||||||| | | ||||  ||||||| ||||||||| || |||||||||||||||||||    
T  38388177 ttaatcaattcactttctccaatcatcatctcatctcatcactcagactctatttcatttctactaaaataggaaccctagccgttaaccac 38388268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 71 - 338
Target Start/End: Complemental strand, 16746495 - 16746238
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||||||||||||||||  | ||||||||||||||||||||    
T  16746495 gaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaaccaatccgatgataacctcactccttattttactaata 16746396  T
Q  171 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtt 268  Q
    |||||||||||  ||||||||||||||||  |||            |||||| ||||||||| ||||| ||| || ||| | ||||||||||||||| ||    
T  16746395 ttatcctacctcacacaaacttatggttaggccc------------aaaataatttttaatccattcactttttctcatatccatctcatctcatcattt 16746308  T
Q  269 acactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    | ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  16746307 agactctttcatttctactaaaaaagaaactctagccgtcaaccacaccaaacccattgttcatcaccac 16746238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 19947826 - 19947981
Alignment:
Q  77 gatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcc 176  Q
    |||||| |||| ||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  19947826 gatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcc 19947925  T
Q  177 tacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatc 230  Q
    |||||  ||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  19947926 tacctcacacaaacttatggttaggcccaaaattaaacataagatactttttaatc 19947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 72 - 338
Target Start/End: Original strand, 31896009 - 31896258
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    |||||||||||||||||||| ||||||| ||||| |||| | ||||||||||||             ||||||||  |||||||||||||||||||||||    
T  31896009 aaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaac-------------cgatgataaccacactccttattttactaatat 31896095  T
Q  172 tatcctacctcaca--aacttatggttaaacccaaaattaaa------cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcat 263  Q
    ||||||||||||||  ||||||||||||  ||||||||||||      ||||||||| ||| ||||| ||||| ||||||           ||||||| |    
T  31896096 tatcctacctcacacaaacttatggttaggcccaaaattaaagtccaacataaaatattttataatccattcactttctc-----------tcatctcgt 31896184  T
Q  264 cagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    |||| | ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31896185 cagtca-actctttcatttctactaaaaaagaaaccatagccgtcaaccacaccaaacccattgttcatcgccac 31896258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 16746614 - 16746550
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaacca 135  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||  |||||||||    
T  16746614 gaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 31895923 - 31895998
Alignment:
Q  6 caacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcaggccttgtttcgttcggtttgaaaccgatct 81  Q
    |||| ||||||||||| ||||||||||||||||       |||| | |||||||| ||||||||||||||||||||    
T  31895923 caacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatct 31895998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 17770471 - 17770592
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgt 307  Q
    |||||||||||||  |||||  ||||| ||  || |||| ||||||||||||| || | ||||||  | ||||| |||||||||||| ||| ||||||||    
T  17770471 aacataaaatactccttaattcattcacttcatctcatcctcatctcatctcaccactcacactctatatcatttctactaaaaaag-aacactagccgt 17770569  T
Q  308 taaccacaccaaacccattgttc 330  Q
     ||||||||| ||||||| ||||    
T  17770570 caaccacacctaacccatcgttc 17770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 69 - 338
Target Start/End: Original strand, 7995055 - 7995340
Alignment:
Q  69 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 168  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |||  ||||||||||||||||||||    
T  7995055 ttgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaaccgatgaaccaatccgataataaccacactccttattttactaa 7995154  T
Q  169 tattatcctacctcacaaacttatggttaaacccaaaatta-----aacataaaatactttttaatcaattcaatttctcccatct------------tc 251  Q
    ||||||| |||||||||||||||||||| |  |||||||||     |||||| |||||||||||||| ||||| ||||||  || |            ||    
T  7995155 tattatcttacctcacaaacttatggtt-aggccaaaattaaagtcaacatagaatactttttaatccattcattttctcttatttttatctgacatctc 7995253  T
Q  252 atctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    | ||||||| |||||| | || |||||||| |||||| ||||||||||||| | |||||||| | ||||||||||||||||||||||    
T  7995254 aactcatcttatcagtcagaccctttcatttctactacaaaagaaaccctaactgttaaccaaatcaaacccattgttcatcgccac 7995340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 71 - 255
Target Start/End: Complemental strand, 7352443 - 7352258
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||| || |||||||||||||  ||||||||||||||||||||||    
T  7352443 gaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgataaccacactccttattttactaata 7352345  T
Q  171 ttatcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatct 255  Q
    ||||||||| |||||  ||||||| |||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||    
T  7352344 ttatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatccattcactttctctcatcttcatct 7352258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 71 - 255
Target Start/End: Original strand, 46993360 - 46993552
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||    
T  46993360 gaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaatccgatgataaccacactccttattttactaata 46993459  T
Q  171 ttatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatcttcatct 255  Q
    ||||| |||||  |||||||||| |||||| ||||||||||      ||||||||||||||||||||| |||||||||||| |||||||||||    
T  46993460 ttatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaacataaaatactttttaatccattcaatttctctcatcttcatct 46993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 249
Target Start/End: Original strand, 39695194 - 39695370
Alignment:
Q  71 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 170  Q
    ||||| ||| ||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||| |||||||  | |||||||||||||||    |    
T  39695194 gaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgataacctcactccttattttac----a 39695289  T
Q  171 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatct 249  Q
    ||||| |||||  |||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||| |||||| |||||    
T  39695290 ttatcttacctcacacaaacttatggttagacccaaaattaaacataaaataatttttcatccattcattttctctcatct 39695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 11727401 - 11727327
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgata 146  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||| |||| ||| ||||||||||||||||    
T  11727401 aaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgata 11727327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 32971489 - 32971605
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactct--ttcattcctactaaaaaagaaaccctagccgt 307  Q
    |||||||| |||| ||||||| |||||  | || | ||| |||||||||||||||| | | |||||  || ||| || |||||||||||||||||| | |    
T  32971489 aacataaactactctttaatccattcacctacttcaatcatcatctcatctcatcactcaaactctattttatttcttctaaaaaagaaaccctagtcat 32971588  T
Q  308 taaccacaccaaaccca 324  Q
    |||||||||| ||||||    
T  32971589 taaccacacctaaccca 32971605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 2197716 - 2197633
Alignment:
Q  99 ggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcctacctc 182  Q
    ||||||||||||||||||||  ||||| ||| |||||| |||||| ||    ||||||  ||||||||||||||||||| ||||    
T  2197716 ggtttttcattttgagatccaagaaaccgatcaaccaaaccgatgctaacttcactccccattttactaatattatccttcctc 2197633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 656 - 467
Alignment:
Q  69 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 168  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  656 ttgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 557  T
Q  169 tattatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatctt 250  Q
    |||||||||||||  ||||||||||||||||  | ||||||||      ||||||||||||||||||||| ||||| |||||| ||||||    
T  556 tattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatctt 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 72 - 319
Target Start/End: Complemental strand, 1917 - 1667
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    |||| |||||| |||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  1917 aaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaatccgatgataacaacactccttattttactaatat 1818  T
Q  172 tatcctacctcacaaacttatg-----gttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatc-tcatctcatca 265  Q
    ||| ||||||||||||||||||     ||||||   |||||  ||||||||||||||||||||| ||||| |||||| |||| ||||| ||||||| ||     
T  1817 tattctacctcacaaacttatggttaggttaaaattaaaatccaacataaaatactttttaatccattcactttctctcatcatcatcttcatctcttc- 1719  T
Q  266 gttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaa 319  Q
     ||| ||||||||||| |||||||||||||||| |||   || |||||||||||    
T  1718 -tta-actctttcatttctactaaaaaagaaactctaagtgtcaaccacaccaa 1667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 46655628 - 46655768
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 171  Q
    ||||| |||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||  |||||| ||||||||||||||||    
T  46655628 aaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacacttcttattttactaatat 46655727  T
Q  172 tatcctacct--cacaaacttatggttaaacccaaaattaa 210  Q
    ||||||||||  |||||| |||||||||  |||||||||||    
T  46655728 tatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 2095504 - 2095595
Alignment:
Q  246 atcttcatctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 338  Q
    ||||||||| |||||||| ||  | ||||||||||| ||||||||||||||||||||||||  |||||||| |||| ||||||||||||||||    
T  2095504 atcttcatc-catctcattagccagactctttcatttctactaaaaaagaaaccctagccgccaaccacacaaaactcattgttcatcgccac 2095595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 11503247 - 11503138
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactct--ttcattcctactaaaaaagaaaccctagccgt 307  Q
    |||||||||||||   ||||| ||||| || ||| |||  | |||||||||||||| | | |||||  |||||| |||||||||||||||||||||| ||    
T  11503247 aacataaaatactacataatccattcacttcctctcatactaatctcatctcatcactcagactctatttcatttctactaaaaaagaaaccctagctgt 11503148  T
Q  308 taaccacacc 317  Q
     |||||||||    
T  11503147 caaccacacc 11503138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 11690097 - 11690034
Alignment:
Q  254 ctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacacc 317  Q
    |||||||||||| | | ||||||||||| ||||||||| ||||||| ||| ||| |||||||||    
T  11690097 ctcatctcatcactcaaactctttcatttctactaaaagagaaaccgtagacgtcaaccacacc 11690034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 44682070 - 44682023
Alignment:
Q  72 aaaccgatctagtttggttttgttcatggtttttcattttgagatccg 119  Q
    |||||||||||||||||||| |||| |||||||| ||||||| |||||    
T  44682070 aaaccgatctagtttggtttggttcttggtttttaattttgaaatccg 44682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 44285802 - 44285890
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaa 296  Q
    |||||||||||||   ||||  ||||| ||||||||||| || ||||||||||||| | ||||||  |||| || ||||||||||||||    
T  44285802 aacataaaatactccataattcattcactttctcccatcatcgtctcatctcatcattcacactctatttcgtttctactaaaaaagaa 44285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 33982 - 34088
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgt 307  Q
    |||||||| ||||  |||||| ||||| ||||||||||| ||||||||| |||||| ||| ||||  ||||||| ||||||||| || |||||||||| |    
T  33982 aacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcacttagactcgatttcatttctactaaaataggaaccctagccat 34081  T
Q  308 taaccac 314  Q
     ||||||    
T  34082 caaccac 34088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 14007 - 14111
Alignment:
Q  212 cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgtta 309  Q
    |||||| ||||  |||||| ||||| ||||| ||||| |||||||||||||||| | | ||||  ||||||| ||||||||| || |||||||||| | |    
T  14007 cataaagtactacttaatccattcactttcttccatcatcatctcatctcatcactcagactcgatttcatttctactaaaataggaaccctagccatca 14106  T
Q  310 accac 314  Q
    |||||    
T  14107 accac 14111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 9826996 - 9827051
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatca 265  Q
    |||||||||||||  |||||  ||||| ||||||||||| ||||||||||||||||    
T  9826996 aacataaaatactccttaattcattcactttctcccatcatcatctcatctcatca 9827051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 5416284 - 5416370
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactctttcattcctactaaaaaagaa 296  Q
    ||||||||||| | ||||||  ||||| |||||| |||| ||||||||||| |||| | | ||| |||||||  |||||||||||||    
T  5416284 aacataaaatagtctttaattcattcactttctctcatcatcatctcatctaatcattcagactatttcattattactaaaaaagaa 5416370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 26880030 - 26880155
Alignment:
Q  210 aacataaaatactttttaatcaattcaatttctcccatcttcat---ctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagc 304  Q
    |||||||||||||  |||||| ||||| ||||||||||| ||||   ||||||| |||| ||| ||||  ||||||| |  ||| ||||||||||||||     
T  26880030 aacataaaatactcattaatccattcactttctcccatcatcatcaactcatctgatcacttagactctatttcatttcgtctagaaaagaaaccctagt 26880129  T
Q  305 cgttaaccacaccaaacccattgttc 330  Q
    | | ||| ||||| ||||||| ||||    
T  26880130 cctcaactacacctaacccatcgttc 26880155  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 6564 - 6626
Alignment:
Q  213 ataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactct 275  Q
    |||||||||| ||||||  ||||| ||||||||||| ||||| |||||||||| | |||||||    
T  6564 ataaaatactctttaattcattcactttctcccatcatcatcccatctcatcattcacactct 6626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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