View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_112 (Length: 357)
Name: NF10954A_low_112
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_112 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 131 - 348
Target Start/End: Original strand, 922162 - 922380
Alignment:
| Q |
131 |
cagtcgaaaatgtggagggttaaagatgatcagggtcgtattattactattcattctgatcatgctcctggtatgctttggtttgattcagaatttctgt |
230 |
Q |
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| T |
922162 |
cagtcgaaaatgtggagggttaaagatgatcagggtcgtattattactattcattctgatcatgctcctggtatgctttggtttgattcagaatttctgt |
922261 |
T |
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| Q |
231 |
ttgttaaattcatattacggtcataatttataaagtttccttttcaatttcaagtttagggtctgtttggattagacttatttgagtatatata-tgacc |
329 |
Q |
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| T |
922262 |
ttgttaaattcatattacggtcataatttataaagtttccttttcaatttcaagtttagggtctgtttggattagacttatttgagtttatatactgacc |
922361 |
T |
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| Q |
330 |
taagttttgtgatattgtt |
348 |
Q |
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| T |
922362 |
taagttttgtgatactgtt |
922380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 154 - 305
Target Start/End: Original strand, 14365020 - 14365169
Alignment:
| Q |
154 |
agatgatcagggtcgtattattactattcattctgatcatgctcctggtatgctttggtttgattcagaatttctgtttgttaaattcatattacggtca |
253 |
Q |
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| T |
14365020 |
agatgatcgggaccgtgttattactgttcattctgattcggttcctggtaagctttggtttgattcaggatttcttgttgttaaattcatattactgtca |
14365119 |
T |
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| Q |
254 |
taatttataaagtttccttttcaatttcaagtttagggtctgtttggattag |
305 |
Q |
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| T |
14365120 |
taatttat--agtttccttttcaatttcaagtttagggtctgtgtggattag |
14365169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 922034 - 922096
Alignment:
| Q |
3 |
acgtatagaatacgccagagggcgtttataagaaagactagtcacaatggtaagttagactcc |
65 |
Q |
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| T |
922034 |
acgtatagaatacgccagagggtgtttataagaaagactagtcacaatggtaagttagactcc |
922096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 28792104 - 28792148
Alignment:
| Q |
273 |
ttcaatttcaagtttagggtctgtttggattagacttatttgagt |
317 |
Q |
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| T |
28792104 |
ttcaatttcaagtttagtgtctgtttggataggacttatttgagt |
28792148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 21405065 - 21405120
Alignment:
| Q |
286 |
ttagggtctgtttggattagacttatttgagtatatata-tgacctaagttttgtga |
341 |
Q |
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| T |
21405065 |
ttagggtctgtttggatt-gacttatttgagcttatatactgacataagttttgtga |
21405120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 10640105 - 10640050
Alignment:
| Q |
293 |
ctgtttggattagacttatttgagtatatata-tgacctaagttttgtgatattgtt |
348 |
Q |
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| T |
10640105 |
ctgtttggattag-cttatttgagtttatctactgacataagttttgtgatattgtt |
10640050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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