View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_119 (Length: 353)

Name: NF10954A_low_119
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_119
NF10954A_low_119
[»] scaffold0128 (2 HSPs)
scaffold0128 (148-353)||(18871-19075)
scaffold0128 (22-147)||(18554-18679)
[»] chr8 (4 HSPs)
chr8 (25-112)||(13580396-13580485)
chr8 (25-77)||(28376659-28376711)
chr8 (25-110)||(26835636-26835721)
chr8 (33-97)||(22930331-22930395)
[»] chr1 (3 HSPs)
chr1 (25-110)||(8246762-8246847)
chr1 (25-110)||(1240429-1240514)
chr1 (25-79)||(3265538-3265592)
[»] chr6 (3 HSPs)
chr6 (25-110)||(12174322-12174407)
chr6 (25-74)||(10668956-10669005)
chr6 (25-77)||(9815747-9815799)
[»] chr5 (1 HSPs)
chr5 (25-110)||(16570538-16570623)
[»] chr4 (4 HSPs)
chr4 (25-78)||(47059692-47059745)
chr4 (25-78)||(47082057-47082110)
chr4 (25-79)||(12167052-12167106)
chr4 (25-94)||(36071615-36071684)
[»] chr2 (2 HSPs)
chr2 (25-110)||(40876967-40877052)
chr2 (25-77)||(5163794-5163846)
[»] chr7 (3 HSPs)
chr7 (25-97)||(3940706-3940778)
chr7 (25-97)||(9429391-9429463)
chr7 (25-77)||(35812616-35812668)
[»] chr3 (1 HSPs)
chr3 (25-97)||(15670920-15670992)


Alignment Details
Target: scaffold0128 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 148 - 353
Target Start/End: Original strand, 18871 - 19075
Alignment:
Q  148 ggtaaccaaacctgcaaagccaagaattgatgatacaaagaaggagggaattgaactgagtagcaaaaacggtcctgacagagattaagcaccataacaa 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18871 ggtaaccaaacctgcaaagccaagaattgatgat-caaagaaggagggaattgaactgagtatcaaaaacggtcctgacagagattaagcaccataacaa 18969  T
Q  248 atgattgcattgtaatctggtttgaagcaaatctgatactgaattattgttatagttatagttgccatcgtatctgttctagttaaggcattaatggctc 347  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18970 atgattgcattgtaatctggtttgaagcaaatctgacactgaattattgttatagttatagttgccatcgtatctgttctagttaagacattaatggctc 19069  T
Q  348 tcttga 353  Q
    ||||||    
T  19070 tcttga 19075  T

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Target: scaffold0128; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 18554 - 18679
Alignment:
Q  22 ctgaaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatatttaatgttaagtt 121  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  18554 ctgaaattaatatttttacttattagttagtggtatatacatgtatttctttttaacttgctttgaataattctataaaataaatatttaatgttaagtt 18653  T
Q  122 attaattatgtggataatgaaataat 147  Q
    ||||||||||||||||||||||||||    
T  18654 attaattatgtggataatgaaataat 18679  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 13580485 - 13580396
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctat--aaaatatatatttaa 112  Q
    |||||| |||||||||||| ||||||||| |||||| || ||||||||||||| | ||| ||| |||||||||  ||||||||| |||||    
T  13580485 aaattattatttttacttaatagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaaatatatttttaa 13580396  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 28376659 - 28376711
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaa 77  Q
    |||||| |||||||||||| ||||||||| |||||| || |||||||||||||    
T  28376659 aaattattatttttacttagtagttagtactatatagatatatttctttttaa 28376711  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 26835721 - 26835636
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatattt 110  Q
    |||||| |||||||||||| |||||||||  ||||| || ||||||||||||| || || | | |||||||||  || ||||||||    
T  26835721 aaattattatttttacttaatagttagtacaatataaatatatttctttttaattttcttttattaattctattgaaaatatattt 26835636  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 22930331 - 22930395
Alignment:
Q  33 atttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctat 97  Q
    ||||||||||| ||||||||| |||||| || ||| ||||||||| | ||| ||| |||||||||    
T  22930331 atttttacttaatagttagtactatatagatatatatctttttaattcgctttgattaattctat 22930395  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 8246847 - 8246762
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatattt 110  Q
    |||||| |||||||||||| ||||||||| |||||| || ||||||||||||| ||| | ||| |||||||||  || ||||||||    
T  8246847 aaattattatttttacttaatagttagtactatatagatatatttctttttaatttgatttgattaattctattgaaaatatattt 8246762  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 1240429 - 1240514
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatattt 110  Q
    |||||| |||||||||||| ||||||||| |||||| || |||||||||||||   ||| ||| |||||||||  || ||||||||    
T  1240429 aaattattatttttacttagtagttagtactatataaatatatttctttttaatccgctttgattaattctattgaaaatatattt 1240514  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3265592 - 3265538
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaact 79  Q
    |||||| |||||||||||| ||||||||| || ||| || |||||||||||||||    
T  3265592 aaattattatttttacttaatagttagtattaaatagatatatttctttttaact 3265538  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 12174322 - 12174407
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatattt 110  Q
    |||||| |||||||||||| ||||||||| |||||| || ||||||||||||| | | | ||| ||||| ||| ||| ||||||||    
T  12174322 aaattattatttttacttagtagttagtactatatagatatatttctttttaattcgttttgattaattatattaaaaatatattt 12174407  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 10669005 - 10668956
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttt 74  Q
    |||||| |||||||||||||||||||||| |||||| || ||| ||||||    
T  10669005 aaattattatttttacttattagttagtattatatagatatatatctttt 10668956  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 9815799 - 9815747
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaa 77  Q
    |||||| |||||||||||| |||||| || |||||| || |||||||||||||    
T  9815799 aaattattatttttacttagtagttaatactatatagatatatttctttttaa 9815747  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 16570623 - 16570538
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatattt 110  Q
    |||||| |||||||||||||||||| |||  ||||| || ||||||||||||| |  || ||| ||||||||| ||| ||||||||    
T  16570623 aaattattatttttacttattagttggtaccatatagatatatttctttttaattcactttgattaattctattaaaaatatattt 16570538  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 47059692 - 47059745
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaac 78  Q
    |||||| |||||||||||||||||||||| |||| | || ||||||||||||||    
T  47059692 aaattattatttttacttattagttagtattatacaaatatatttctttttaac 47059745  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 47082110 - 47082057
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaac 78  Q
    |||||| |||||||||||||||||||||| |||| | || ||||||||||||||    
T  47082110 aaattattatttttacttattagttagtattatacaaatatatttctttttaac 47082057  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 12167052 - 12167106
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaact 79  Q
    |||||| ||||||| |||| || ||||||||||||| |||||||| |||||||||    
T  12167052 aaattattatttttgcttagtaattagtagtatatatatgtatttatttttaact 12167106  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 36071684 - 36071615
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattc 94  Q
    |||||| |||||||||||  ||||||||| |||||| || ||||||||||||| || || ||| ||||||    
T  36071684 aaattattatttttacttgatagttagtactatatagatatatttctttttaattttctttgattaattc 36071615  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 40877052 - 40876967
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctataaaatatatattt 110  Q
    |||||| |||||||||||  ||||||||| |||||| || ||||||||||||||||| |  || |||||||||  || ||||||||    
T  40877052 aaattattatttttacttggtagttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaatatattt 40876967  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 5163794 - 5163846
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaa 77  Q
    |||||| |||||||||||| ||||||||| |||||| || ||| |||||||||    
T  5163794 aaattattatttttacttagtagttagtactatataaatatatatctttttaa 5163846  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 3940778 - 3940706
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctat 97  Q
    |||||| |||||||||||| |||| ||||  ||||| || ||||||||||||| || || ||| |||||||||    
T  3940778 aaattattatttttacttagtagtaagtataatatagatatatttctttttaatttactttgattaattctat 3940706  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 9429463 - 9429391
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctat 97  Q
    |||||| |||||||| ||| ||||||||| |||||| || |||||||||||| || | | ||| |||||||||    
T  9429463 aaattagtatttttatttaatagttagtattatataaatatatttctttttatctcgttttgattaattctat 9429391  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 35812616 - 35812668
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaa 77  Q
    |||||| |||||||||||| || |||||| |||||| || |||||||||||||    
T  35812616 aaattattatttttacttaataattagtactatatagatatatttctttttaa 35812668  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 15670920 - 15670992
Alignment:
Q  25 aaattaatatttttacttattagttagtagtatatacatgtatttctttttaacttgctctgaataattctat 97  Q
    |||||| |||||||||||| |||||| ||  ||||| || ||||||||||||| ||| | ||| |||||||||    
T  15670920 aaattattatttttacttagtagttattacaatatagatatatttctttttaatttgttttgattaattctat 15670992  T

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