View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_12 (Length: 474)
Name: NF10954A_low_12
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 5 - 467
Target Start/End: Complemental strand, 13293107 - 13292638
Alignment:
| Q |
5 |
tggagtgtcaaaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaagaagaca |
104 |
Q |
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| T |
13293107 |
tggagtgtcaaa-gggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaagaagaca |
13293009 |
T |
|
| Q |
105 |
attttagtactgaaaatatatacaagtaaccagtgattcatattttcaannnnnnn------aacaagactaggctcttaattggaatcatatgaagttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||| |
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| T |
13293008 |
attttagtactgaaaatatatacaagtaaccagtgattcatattattattatttttttttttaataagactaggctcttaattggaatcatatgaagttc |
13292909 |
T |
|
| Q |
199 |
ttaaa-aactttagaatataggaattctactagtatatgaaagggtt-tgaagtccagacccattaagtaaattattcatatcataccagtgttgtttgt |
296 |
Q |
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| T |
13292908 |
ttaaacaactttagaatataggaattctactagtatatgaaagggttatgaagtccagacccattaagtaaattattcatatcataccagtgttgtttgt |
13292809 |
T |
|
| Q |
297 |
tactatgtaataaagtcaatattaaatggatttaacttaatgtttaaaacacaaacaatacgtcaacaatgcatgcatttggaacctcaaattggaagat |
396 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
13292808 |
tactatgtaacaaagtcaaaattaaatggatttaacttaatgtttaaaacacaaacaatacgtaaacaatgcatacatttggaacctcaaattggaagat |
13292709 |
T |
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| Q |
397 |
atcatgattttgttgagagaaattaaacaatattcaatatatgcacataactgacgaaaaagcagaagaaa |
467 |
Q |
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| T |
13292708 |
atcatgattttgttgagagaaattaaacaatattcaatacatgcacatatctgacgaagaagcagaagaaa |
13292638 |
T |
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