View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_123 (Length: 350)
Name: NF10954A_low_123
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_123 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 23495688 - 23496021
Alignment:
| Q |
12 |
tattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggattatgttaacatggattctagccgtgagaacgatacgagagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495688 |
tattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggagcatgttaacatggattctagccgtgagaacgatacgagagt |
23495787 |
T |
|
| Q |
112 |
tttgttctttgcannnnnnnctcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgc |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495788 |
tttgttctttgcatttttttttcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgc |
23495887 |
T |
|
| Q |
212 |
tcaagcagacatgtgataataaacaagtcctatatcaaataatgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaa |
311 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495888 |
ttaagcagacatgtaataataaacaagtcctatatcaaatactgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaa |
23495987 |
T |
|
| Q |
312 |
tatcattcaatattgcaaagaacatgttggtaat |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23495988 |
tatcattcaatattgcaaagaacatgttggtaat |
23496021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University