View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_124 (Length: 350)
Name: NF10954A_low_124
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_124 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 27775064 - 27774748
Alignment:
| Q |
17 |
gacataatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccgaccaccaggataactacggctgttgtttatctt |
116 |
Q |
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| T |
27775064 |
gacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatctt |
27774965 |
T |
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| Q |
117 |
ctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagatatttttccttacattgattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774964 |
ctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagatatttttccttacattgattt |
27774865 |
T |
|
| Q |
217 |
ttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaggtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774864 |
ttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
27774765 |
T |
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| Q |
317 |
tcctgcaaccaatgatg |
333 |
Q |
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||||||||||||||||| |
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| T |
27774764 |
tcctgcaaccaatgatg |
27774748 |
T |
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