View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_127 (Length: 349)
Name: NF10954A_low_127
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_127 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 30138199 - 30138547
Alignment:
| Q |
1 |
tatggtaaatgaaagaagagataatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaagattgaaactttgtttgttttggatttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30138199 |
tatggtaaatgaaagaagagataatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgtt |
30138298 |
T |
|
| Q |
101 |
gaaggaagaaatcatgagagcaagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138299 |
gaaggaagaaatcatgagagcaagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggtt |
30138398 |
T |
|
| Q |
201 |
gttttgaagaatcctgctggaagacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138399 |
gttttgaagaatcctgctggaagacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatga |
30138498 |
T |
|
| Q |
301 |
aagtgaggattggaatggctaaggttaaacctgaagcccatgcaattga |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138499 |
aagtgaggattggaatggctaaggttaaacctgaagcccatgcaattga |
30138547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University