View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_129 (Length: 347)
Name: NF10954A_low_129
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 30878157 - 30877815
Alignment:
| Q |
1 |
tcaagcaaatttttcaacattttacatgtaaagaaagtaccaaggccacaccttacatcttattggtacaagaacttctccaatataaaaaggtgtgtat |
100 |
Q |
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| T |
30878157 |
tcaagcaaatttttcaacattttacaagtaaagaaagtaccaaggccacaccttacatcttattggtacaagaacttctccaatataaaaaggtgtgtat |
30878058 |
T |
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| Q |
101 |
tccataacagttccttcacttccttagccatcatcatcatc---tactgtcacttgttcactgacactgtcattttcatcactatcacactccaaaacaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878057 |
tccataacagttccttcacttccttagccatcatcatcatcatctactgtcacttgttcactgacactgtcattttcatcactatcacactccaaaacaa |
30877958 |
T |
|
| Q |
198 |
ctctgacacagaacaaacacctctccttattccattgtttccaaggttgtctcctgtgtttggtccccacaaacaactctcctttttcatttctcttttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877957 |
ctctgacacagaacaaacacctctccttattccattgtttccaaggttgtctcctgtgtttggtccccacaaacaactctcctttttcatttctcttttc |
30877858 |
T |
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| Q |
298 |
actttgctatggaaatggaaggttatgatattgttggagatgc |
340 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30877857 |
actttgctatggaaatggaaggttatgatatatttggagatgc |
30877815 |
T |
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