View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_134 (Length: 342)
Name: NF10954A_low_134
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_134 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 30049719 - 30049390
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact---------------- |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049719 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagtttt |
30049620 |
T |
|
| Q |
101 |
---aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049619 |
actaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcc |
30049520 |
T |
|
| Q |
198 |
tccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcag |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049519 |
tccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcag |
30049420 |
T |
|
| Q |
298 |
aactgcagtgctgcagttttacatctccat |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30049419 |
aactgcagtgctgcagttttacatctccat |
30049390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 7162671 - 7162343
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaactt---------------------gtgcag-ataatctta |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | ||| |
|
|
| T |
7162671 |
aatacttagtaatgactcagcctatgcttagctgatgtcatatgacataaacctgcttaacttgtgcagataaccttattacttgtgcagcatagtttta |
7162572 |
T |
|
| Q |
99 |
ctaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcct |
198 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162571 |
ctaacaaaataagttaaaatgattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcct |
7162472 |
T |
|
| Q |
199 |
ccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcaga |
298 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
7162471 |
ccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcaga |
7162372 |
T |
|
| Q |
299 |
actgcagtgctgcagttttacatctccat |
327 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
7162371 |
actgcagtgctgcaattttacatctccat |
7162343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 30045316 - 30045121
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact---------------- |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045316 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagtttt |
30045217 |
T |
|
| Q |
101 |
---aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045216 |
actaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
30045121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 3945973 - 3945644
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact---------------- |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945973 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagtttt |
3945874 |
T |
|
| Q |
101 |
---aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945873 |
actaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcc |
3945774 |
T |
|
| Q |
198 |
tccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcag |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945773 |
tccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcag |
3945674 |
T |
|
| Q |
298 |
aactgcagtgctgcagttttacatctccat |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3945673 |
aactgcagtgctgcagttttacatctccat |
3945644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 3941574 - 3941377
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact---------------- |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941574 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagtttt |
3941475 |
T |
|
| Q |
101 |
---aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941474 |
actaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
3941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 22365597 - 22365272
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatcttact-------------------a |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
22365597 |
aatacttagtaatgactcagcctatgcttagttgatgtcatatgacataaacctacttaacttgtgcagataaccttacttatgcagcatagttttacta |
22365498 |
T |
|
| Q |
102 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctcct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365497 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctcct |
22365398 |
T |
|
| Q |
202 |
taaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaact |
301 |
Q |
| |
|
|||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365397 |
taaaacttatctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaact |
22365298 |
T |
|
| Q |
302 |
gcagtgctgcagttttacatctccat |
327 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
22365297 |
gcagtgctgcaattttacatctccat |
22365272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 22361210 - 22361019
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatcttact-------------------a |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
22361210 |
aatacttagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttacttgtgcagcatagctttacta |
22361111 |
T |
|
| Q |
102 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361110 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
22361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 23397337 - 23397404
Alignment:
| Q |
109 |
aagttaaaataattacacaca--taagcaataaagtaacataaacaataaagtattcagaaaagtttt |
174 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
23397337 |
aagttaaaatcattacacacacataggcaataaagtaacattaacaacgaaatattcagaaaagtttt |
23397404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 39949463 - 39949786
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttg----------------tgcag-ataatcttactaac |
103 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| |
|
|
| T |
39949463 |
aatacttagtaataactcagcctatgtttagctgatgtcatatgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaac |
39949562 |
T |
|
| Q |
104 |
aaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctcctta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949563 |
aaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctcctta |
39949662 |
T |
|
| Q |
204 |
aaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgc |
303 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949663 |
aaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgc |
39949762 |
T |
|
| Q |
304 |
agtgctgcagttttacatctccat |
327 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39949763 |
agtgctgcagttttacatctccat |
39949786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 39953855 - 39954045
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttg----------------tgcag-ataatcttactaac |
103 |
Q |
| |
|
|||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| |
|
|
| T |
39953855 |
aatacttagtaataactcagtctatgtttagctgatgtcatatgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaac |
39953954 |
T |
|
| Q |
104 |
aaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacac |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39953955 |
aaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacac |
39954045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 196311 - 196625
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatcttact-------------------a |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | |
|
|
| T |
196311 |
aatacttagtaatgactcagcctatgcttagctgatgtcatatgacgtaaacctacttaactcgtgcagataaccttacttgtgcagcatagttttacta |
196410 |
T |
|
| Q |
102 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctcct |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196411 |
acaaaacaagttaaaatgattacacacataaacaataaagtaacataa-----------ttcagaaaagttttataggtcaattagtcaacactcctcct |
196499 |
T |
|
| Q |
202 |
taaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaact |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196500 |
taaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaact |
196599 |
T |
|
| Q |
302 |
gcagtgctgcagttttacatctccat |
327 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
196600 |
gcagtgctgcagttttacatctccat |
196625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 200690 - 200872
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataa-------------------tcttacta |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
200690 |
aatacttagtaatgactcagcctatgcttagctgatgtcatatgaggtaaacctacttaacttgtgcagataaccttacttgtgcagcatagttttacta |
200789 |
T |
|
| Q |
102 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
195 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
200790 |
acaaaacaagttaaaatgattacacacataaacaataaagtaacata-----------attcagaaaagttttataggtcaattagtcaacact |
200872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 1330760 - 1330569
Alignment:
| Q |
21 |
aatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataa-------------------tcttacta |
101 |
Q |
| |
|
|||||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1330760 |
aatacttactaatgactcaacctatactttgctgatgtcatatgacataaacctacttaacttgtgcagataacattacttgtgcagtatagttttacta |
1330661 |
T |
|
| Q |
102 |
acaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1330660 |
acaaaacaagttaaaatgattacacacataagcaatagagtaacataaacaataaagtattcagacaagttttataggtcaattagtcaaca |
1330569 |
T |
|
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