View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_135 (Length: 340)
Name: NF10954A_low_135
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_135 |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: scaffold0889 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 3962 - 4284
Alignment:
| Q |
6 |
agaaacatgcgttctcctttaaattgatgtttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
105 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3962 |
agaaacacgcgttctcctttaaattgatgtt----tatatatttaatatgagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
4057 |
T |
|
| Q |
106 |
gaagtcatgaatagacaacatgaagtcagtaacataatgcaacaaaaattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4058 |
gaagtcatgaatagacaacatgaagtcagtaacataatgcaacaaacattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
4157 |
T |
|
| Q |
206 |
ccaataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaaccattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
305 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4158 |
ctaataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgcaatgtta |
4257 |
T |
|
| Q |
306 |
aactataaatagctccacatattattc |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
4258 |
aactataaatagctccacatattattc |
4284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 4166 - 4488
Alignment:
| Q |
6 |
agaaacatgcgttctcctttaaattgatgtttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
105 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166 |
agaaacacgcgttctcctttaaattgatgtt----tatatatttaatatgagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
4261 |
T |
|
| Q |
106 |
gaagtcatgaatagacaacatgaagtcagtaacataatgcaacaaaaattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262 |
gaagtcatgaatagacaacatgaagtcagtaacataatgcaacaaacattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
4361 |
T |
|
| Q |
206 |
ccaataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaaccattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
305 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4362 |
ctaataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgcaatgtta |
4461 |
T |
|
| Q |
306 |
aactataaatagctccacatattattc |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
4462 |
aactataaatagctccacatattattc |
4488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 325
Target Start/End: Complemental strand, 28580863 - 28580547
Alignment:
| Q |
6 |
agaaacatgcgttctcctttaaattgatgtttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
105 |
Q |
| |
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||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
28580863 |
agaaacatgtgttctcctttaaattaatttttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttattta------gagtag |
28580770 |
T |
|
| Q |
106 |
gaagtcatgaatagacaacatgaagtcag-taacataatgcaacaaaaat--tggcaaacttaaactgcttattttatttatcagttgtcatcaatatta |
202 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||| || | ||||||||||||| ||||||||||||||| || ||||||||||| |
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|
| T |
28580769 |
aaagtcatgaatagacaacatgaagtgagttaacataatgcaacaaacatcgtttcaaacttaaactgtctattttatttatcagctgccatcaatatta |
28580670 |
T |
|
| Q |
203 |
taac-caataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaaccattc-agtagctcaaaagagaaaatatgaaccatgtgcaa |
300 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||| || | |||||||||||||| ||||||||||| |||| || |
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|
| T |
28580669 |
taactgaataaattaatgtgttacaatgcacat-atgcatacatatgttgaccttcaa-tatacaagtagctcaaaagaacaaatatgaaccgtgtgaaa |
28580572 |
T |
|
| Q |
301 |
tgttaaactataaatagctccacat |
325 |
Q |
| |
|
||||| ||||||||||||| |||| |
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| T |
28580571 |
tgttatgctataaatagctctacat |
28580547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 40 - 302
Target Start/End: Complemental strand, 28586990 - 28586731
Alignment:
| Q |
40 |
ttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtaggaagtcatgaatagacaacatgaagtcagtaaca |
139 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||| |||||| ||||||| || | |||||||||| |||||||| ||||||| |||| |
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|
| T |
28586990 |
ttatatattaaatataagaaacttgttct---ttaaattaatttttgttacttagtgt---tgaa--aagtcatgaacagacaacagcaagtcagcaaca |
28586899 |
T |
|
| Q |
140 |
taatgcaacaaaaattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa-ccaataaattaatgtgttcca--atgcacatgc |
236 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||| ||||||| || ||||| |||| |
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| T |
28586898 |
taattaaacaaacattggcaaactaaaactgcttattttatttatcagtatccaccaatattataattaaataaatttatgtgttacaatatgcatatgc |
28586799 |
T |
|
| Q |
237 |
tgcatacatattttgaccttcaaccattcagtagctcaa-aagaga-aaatatgaaccatgtgcaatg |
302 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| || ||| | ||||||||||| ||||||| |
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|
| T |
28586798 |
tgcatacatattttgaccttcaatcagccagtagctcaacaaaagacatatatgaaccatatgcaatg |
28586731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 28575592 - 28575451
Alignment:
| Q |
192 |
catcaatattataaccaa-taaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaaccattcagtagctcaaaagagaaaatatgaa |
290 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||||||| | |||||||||||||||| ||||||||| |
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|
| T |
28575592 |
catcaatattataactaaataaattaatgtgttacaatgcacatgctgcatacacatgctgaccttcaatctaccagtagctcaaaagagcaaatatgaa |
28575493 |
T |
|
| Q |
291 |
ccatgtgcaatgttaaactataaatagctccacatattattc |
332 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| |||| |
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| T |
28575492 |
acgagtgcaatgttaaactataaatagctcaacatatcattc |
28575451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 28568841 - 28568724
Alignment:
| Q |
201 |
tataaccaataaattaatgtgttccaatgcacat--gctgcatacatattttgaccttcaaccattcagtagctcaaaagagaaaatatgaaccatgtgc |
298 |
Q |
| |
|
|||||| ||||||||||||| || |||| ||||| || |||||||||| |||||||||| |||||||||||||||| | |||||| ||| |||||| |
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|
| T |
28568841 |
tataactaataaattaatgtcttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgc |
28568742 |
T |
|
| Q |
299 |
aatgttaaactataaata |
316 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
28568741 |
aatgttcagctataaata |
28568724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 28575690 - 28575591
Alignment:
| Q |
47 |
tttaatataagaaacatgttctcctttaaattaat-----tattgttatttagtgtaggtgtaggaagtcatgaatagacaacatgaagtcagtaacata |
141 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | |||||||||||||| || | |||||||||||||||||||||||||||| ||||| |
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|
| T |
28575690 |
tttaataaaagaaacatgttctcctttaaattaatatttgttttgttatttagtgt---tgaa--aagtcatgaatagacaacatgaagtcagcgacata |
28575596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 26316889 - 26316845
Alignment:
| Q |
44 |
atatttaatataagaaacatgttctcctttaaattaattattgtt |
88 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
26316889 |
atatttaacataagaaacatgttctcctttaaattaattaatgtt |
26316845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 28569116 - 28569073
Alignment:
| Q |
50 |
aatataagaaacatgttctcctttaaattaattattgttattta |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28569116 |
aatataagaaacatgttctcctttaaattaatcgttgttattta |
28569073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 2872 - 2998
Alignment:
| Q |
208 |
aataaattaatgtgttccaatgcacat--gctgcatacatattttgaccttcaaccattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
305 |
Q |
| |
|
|||||||||||||||| |||| ||||| || |||||||||| ||||||||||| ||||||||| | ||||| | ||||| || | |||||||||||| |
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|
| T |
2872 |
aataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatgtta |
2971 |
T |
|
| Q |
306 |
aactataaatagctccacatattattc |
332 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
2972 |
aactataaatagctccacatatcattc |
2998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 2872 - 2998
Alignment:
| Q |
208 |
aataaattaatgtgttccaatgcacat--gctgcatacatattttgaccttcaaccattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
305 |
Q |
| |
|
|||||||||||||||| |||| ||||| || |||||||||| ||||||||||| ||||||||| | ||||| | ||||| || | |||||||||||| |
|
|
| T |
2872 |
aataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatgtta |
2971 |
T |
|
| Q |
306 |
aactataaatagctccacatattattc |
332 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
2972 |
aactataaatagctccacatatcattc |
2998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 5893085 - 5893019
Alignment:
| Q |
266 |
agtagctcaaaagagaaaatatgaaccatgtgcaatgttaaactataaatagctccacatattattc |
332 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
5893085 |
agtagctcaaaagagcaaatatgaaccgtgtgcaatgttcaacaataaatagctccacatatcattc |
5893019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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