View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_14 (Length: 465)
Name: NF10954A_low_14
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 35275002 - 35275464
Alignment:
| Q |
1 |
aatattacaaattatcaatgtgtccaagacctagtcaacttttatgacctagaccctgtaattaaacaatctctcaaaaatctccacacaatatttatta |
100 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275002 |
aatactacaaattatcaatgtgtccaagatctagtcaacctttatgacctagaccctgtaattaaacaatctctcaaaaatctccacacaatatttatta |
35275101 |
T |
|
| Q |
101 |
aattgctgatatgccctcaaattattagtctaactaaattccataaacaccaaaataacaa---acaaaa-accaaaatcaattcacaatcctgcaattc |
196 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
35275102 |
aattgctgatatgccctcaaattattagtctcacaaaattacataaacaacaaaataataataaacaaaaaaccaaaatcaattcacaatcctgcaattc |
35275201 |
T |
|
| Q |
197 |
tttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaaagcagcaccatctctactat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275202 |
tttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaaagcagcaccatctctactat |
35275301 |
T |
|
| Q |
297 |
acttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgtt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275302 |
acttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgtt |
35275401 |
T |
|
| Q |
397 |
gtcaaatttagttggagtgatagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
459 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275402 |
gtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
35275464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 179 - 459
Target Start/End: Original strand, 35289296 - 35289576
Alignment:
| Q |
179 |
ttcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaaag |
278 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
35289296 |
ttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatcttcaccatagcagctgcaaagtctcttttaaaag |
35289395 |
T |
|
| Q |
279 |
cagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataag |
378 |
Q |
| |
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|| | || ||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |
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| T |
35289396 |
caatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaag |
35289495 |
T |
|
| Q |
379 |
gtccttataataattgttgtcaaatttagttggagtgatagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
459 |
Q |
| |
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||| ||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| ||||||||||||| ||||| |
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| T |
35289496 |
gtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtagg |
35289576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 174 - 453
Target Start/End: Original strand, 35307092 - 35307368
Alignment:
| Q |
174 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
35307092 |
atcaattcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattttactcagtttcaccatagcaacggcaaagtctctaga |
35307191 |
T |
|
| Q |
274 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
373 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | ||| |
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| T |
35307192 |
aaaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgca |
35307288 |
T |
|
| Q |
374 |
ataaggtccttataataattgttgtcaaatttagttggagtgatagaatcaaagggtgctaaattggtgtcaccaccaga |
453 |
Q |
| |
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| ||||| ||||| |||||||| ||||| | |||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
35307289 |
acaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcaccaccaga |
35307368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 174 - 445
Target Start/End: Original strand, 35311435 - 35311703
Alignment:
| Q |
174 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
273 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||| |
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| T |
35311435 |
atcaattcacaagcctacaattctttctgatctccccattagtcccagtgagaggactgattttactcagtttcaccatagcagcagcaaagtctgtaga |
35311534 |
T |
|
| Q |
274 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
373 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||| | |||||| ||| ||||||||| |||||||||||||| | |||||||| | ||| |
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|
| T |
35311535 |
aaaagcagcctcattggtactataactcctaaccaaattatcttgaga---cccattattgaaaaggacttgatcagaatggaatagacctttgcttgca |
35311631 |
T |
|
| Q |
374 |
ataaggtccttataataattgttgtcaaatttagttggagtgatagaatcaaagggtgctaaattggtgtca |
445 |
Q |
| |
|
| ||||| |||||||||||||||||||| | |||||||||| || ||||| |||||||||||||||||| |
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|
| T |
35311632 |
acaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtca |
35311703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 177 - 402
Target Start/End: Original strand, 35279949 - 35280174
Alignment:
| Q |
177 |
aattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaa |
276 |
Q |
| |
|
||||||||| |||||||||||||| || || ||||||||||| || |||||||||||| | |||||||||||||||||| |||||||||||| ||| |
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| T |
35279949 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagcaaaagcaaagtctcttctaaa |
35280048 |
T |
|
| Q |
277 |
agcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaata |
376 |
Q |
| |
|
|||| ||||| | ||||||| |||||||||||||| | |||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
35280049 |
agcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaact |
35280148 |
T |
|
| Q |
377 |
aggtccttataataattgttgtcaaa |
402 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
35280149 |
agatccctataataattgttgtcaaa |
35280174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 174 - 453
Target Start/End: Original strand, 35322093 - 35322369
Alignment:
| Q |
174 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
273 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
35322093 |
atcaattcacaagcctacaattctttctaatctccccattagtcccagttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttct |
35322192 |
T |
|
| Q |
274 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
373 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | ||| |
|
|
| T |
35322193 |
aaaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgca |
35322289 |
T |
|
| Q |
374 |
ataaggtccttataataattgttgtcaaatttagttggagtgatagaatcaaagggtgctaaattggtgtcaccaccaga |
453 |
Q |
| |
|
| ||| | ||||| |||||||||||||| || |||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
35322290 |
acaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccaga |
35322369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 35306991 - 35307058
Alignment:
| Q |
16 |
caatgtgtccaagacctagtcaacttttatgacctagaccctgtaattaaacaatctctcaaaaatct |
83 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
35306991 |
caatgtgtccaagatctagtcaacctttatgacttagaccttgtaattaatcaatcccacaaaaatct |
35307058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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