View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_141 (Length: 338)
Name: NF10954A_low_141
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_141 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 54 - 332
Target Start/End: Original strand, 32524677 - 32524959
Alignment:
| Q |
54 |
agttaatttttcattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
153 |
Q |
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| T |
32524677 |
agttaattttccattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
32524776 |
T |
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| Q |
154 |
cctaatccatttctactttca--ttttgttaacttccatttaaagaccctttaacaannnnnnnnnnnnnnnnnnnngtaaaattaagtaactacccact |
251 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
32524777 |
cctaatccatttctactttcattttttgttaacttccatttaaagaccctttaacgattttttctcctttttgttttgtaaaattaagtaactacccact |
32524876 |
T |
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| Q |
252 |
aactc--ataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
332 |
Q |
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| T |
32524877 |
atctcatataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
32524959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 32524599 - 32524666
Alignment:
| Q |
3 |
tttggagttagatatgaagctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
70 |
Q |
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| T |
32524599 |
tttggagttagatatgaacctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
32524666 |
T |
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