View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_143 (Length: 336)
Name: NF10954A_low_143
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_143 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 29011239 - 29010922
Alignment:
| Q |
19 |
cagcttcgttcaatgggcctcataaacaagcacagactaatgtaccctattcacatccagtgccatatcctacaaactattctaacccttatgtgggtgg |
118 |
Q |
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| T |
29011239 |
cagcttcgttcaatggacctcataaacaagcacagactaatgtaccctattcacatccagtgccatatcctacaaactattctaacccttatgtgggtgg |
29011140 |
T |
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| Q |
119 |
accaagctaccctgcagcttctggaccaagttaccaaccaccaagaactccaccaccacctccaccttcaaatgttggttatgctcccaattttcatcaa |
218 |
Q |
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| T |
29011139 |
accaagctaccctgcagcttctggaccaagttaccaaccaccaagaactccaccaccacctccaacttcaaatgttggttatcctcccaattttcatcaa |
29011040 |
T |
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| Q |
219 |
agtaataatggattggcgtcgagttattttaatatgccatcatcatcaggaacagctcctaggcagaggggacctccaggatttgcaatgggagcaggtg |
318 |
Q |
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| T |
29011039 |
agtaataatggattggcgtcgagttatttcaatatgccatcatcatcaggaacagctcctaggcagaggggacctccaggatttgcaatgggagccggtg |
29010940 |
T |
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| Q |
319 |
ctggagcattagcagctg |
336 |
Q |
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| T |
29010939 |
ctggagcattagcagctg |
29010922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 29014551 - 29014252
Alignment:
| Q |
19 |
cagcttcgttcaatgggcctcataaacaagcacagactaatgtacc--ctattcacatccagtgccatatcctacaaactattctaacccttatgtgggt |
116 |
Q |
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| T |
29014551 |
cagcttcgttcaatggacctcataaacaagcacaaacgaatgtaccgcctgatcacatccagtgcctattcctacaaactattctaacccttatgtgggt |
29014452 |
T |
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| Q |
117 |
ggaccaagctaccctgcagcttctggaccaagttaccaaccaccaagaactccaccaccacctccaccttcaaatgttggttatgctcccaattttcatc |
216 |
Q |
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| T |
29014451 |
ggaccaaactatcctgcagcttctggaccaag------------aactcctccaccaccacctccaccttcaaatgttggttatgttcccaattttcatc |
29014364 |
T |
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| Q |
217 |
aaagtaataatggattggcgtcgagttattttaatatgccatcatcatcaggaacagctcctaggcagaggggacctccaggatttgcaatgggagcagg |
316 |
Q |
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| T |
29014363 |
gaagtaatgatggattgacaccgagttattttaatatgccatcatcatcaggaacagctcctaggcagaggggacctccaggtttcgcaataggagcagg |
29014264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 24081938 - 24081872
Alignment:
| Q |
19 |
cagcttcgttcaatgggcctcataaacaagcacagactaatgtac--cctattcacatccagtgcca |
83 |
Q |
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| T |
24081938 |
cagcttcgttcaatggacctcataaacaagcacaaacgaatgtaccgcctactcgcatccagtgcca |
24081872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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