View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_148 (Length: 335)

Name: NF10954A_low_148
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_148
NF10954A_low_148
[»] chr2 (1 HSPs)
chr2 (13-335)||(45671511-45671837)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 45671511 - 45671837
Alignment:
Q  13 gtccaataatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacat 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45671511 gtccaaaaatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacat 45671610  T
Q  113 ttgtaagctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacatatttgagttaatcaattggctg----aagttagtatttcttaccct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||     
T  45671611 ttgtaagctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacagatttgagttaatcaattggctgaaacaagttagtatttcttacccg 45671710  T
Q  209 ttgaacgagtcgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagt 308  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45671711 ttgaacgagccgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagt 45671810  T
Q  309 tcaacagcactggcagccatgacatga 335  Q
    |||||||||||||||||||||||||||    
T  45671811 tcaacagcactggcagccatgacatga 45671837  T

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