View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_149 (Length: 334)
Name: NF10954A_low_149
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_149 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 3602531 - 3602196
Alignment:
| Q |
1 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaata---tattg |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
3602531 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaataatatattg |
3602432 |
T |
|
| Q |
98 |
tattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagagggcagtga |
192 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
3602431 |
tattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgagagggcagtga |
3602332 |
T |
|
| Q |
193 |
aggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagagaa |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3602331 |
aggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtattagagaa |
3602232 |
T |
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| Q |
293 |
attgcaaccttatttggaaaatggcaaagtgaaacc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3602231 |
attgcaaccttatttggaaaatggcaaagtgaaacc |
3602196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 3598371 - 3598043
Alignment:
| Q |
1 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaatatattgtat |
100 |
Q |
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| T |
3598371 |
aaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaatatgttgtat |
3598272 |
T |
|
| Q |
101 |
tatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagagggcagtgaagg |
195 |
Q |
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| T |
3598271 |
aatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagagggcagtgaagg |
3598172 |
T |
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| Q |
196 |
ctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagagaaatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3598171 |
ctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagcagtgttagagaaatt |
3598072 |
T |
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| Q |
296 |
gcaaccttatttggaaaatggcaaagtga |
324 |
Q |
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| T |
3598071 |
gcaaccttatttggaaaatggcagagtga |
3598043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 3595146 - 3594814
Alignment:
| Q |
1 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaatatattgtat |
100 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
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| T |
3595146 |
aaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaatatgttgtat |
3595047 |
T |
|
| Q |
101 |
tatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagagggcagtgaagg |
195 |
Q |
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|||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3595046 |
aatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagagggcactgaagg |
3594947 |
T |
|
| Q |
196 |
ctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagagaaatt |
295 |
Q |
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||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3594946 |
ctgtaaatgaaggaggaaaatttttgacaatactaccacctggaactccaccagctatcccttttgcactcacttcagatggagctgtgttagagaaatt |
3594847 |
T |
|
| Q |
296 |
gcaaccttatttggaaaatggcaaagtgaaacc |
328 |
Q |
| |
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| ||||||| ||||||||||||||||||||||| |
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| T |
3594846 |
gaaaccttacttggaaaatggcaaagtgaaacc |
3594814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 3583585 - 3583665
Alignment:
| Q |
248 |
agctatccctttcttactcacttcagatggagctgtgttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
328 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
3583585 |
agctatcactttcttactcacttcagatggagcagtgttagagaaattgaaaccttacttggaaaatggcaaactgaaacc |
3583665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12877018 - 12877079
Alignment:
| Q |
1 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagat |
62 |
Q |
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|||||||||| |||||| || |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
12877018 |
aaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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