View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_150 (Length: 334)
Name: NF10954A_low_150
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_150 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 332
Target Start/End: Original strand, 3176015 - 3176344
Alignment:
| Q |
3 |
tgggtcgggggtttagcannnnnnnnaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatg |
102 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176015 |
tgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatg |
3176114 |
T |
|
| Q |
103 |
gtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176115 |
gtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttg |
3176214 |
T |
|
| Q |
203 |
gagaaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagag |
302 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
3176215 |
gagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgtaaccttgaaagagagggagttgagtgatgttggtgtgttgagag |
3176314 |
T |
|
| Q |
303 |
agtgtgatagttgatctatttataagagct |
332 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
3176315 |
agtgtgagagttgatctatttataagagct |
3176344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 3175951 - 3175998
Alignment:
| Q |
29 |
aggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg |
76 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
3175951 |
aggatgtaaaggagtgtgaacatgagaaggagcaagggatggtgagtg |
3175998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 24541213 - 24541537
Alignment:
| Q |
3 |
tgggtcgggggtttagcannnnnnnnaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatg |
102 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24541213 |
tgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggtgaggtgggctagctaatg |
24541312 |
T |
|
| Q |
103 |
gtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttc |
202 |
Q |
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||||||||| |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||| |
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| T |
24541313 |
gtttatgaacaggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgctatgaaagaggttatttg |
24541412 |
T |
|
| Q |
203 |
gagaaagagaaaaactaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgaga |
301 |
Q |
| |
|
|||||||||||||| |||| | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
24541413 |
gagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagtgatgttgatgtgttgaga |
24541512 |
T |
|
| Q |
302 |
gagtgtgatagttgatctatttata |
326 |
Q |
| |
|
|||||||| |||||||||||||||| |
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| T |
24541513 |
gagtgtgagagttgatctatttata |
24541537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 24540960 - 24541007
Alignment:
| Q |
29 |
aggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg |
76 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||| | ||||||||||| |
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| T |
24540960 |
aggatgtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg |
24541007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 69 - 332
Target Start/End: Original strand, 41525197 - 41525460
Alignment:
| Q |
69 |
ggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta |
168 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||| |
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| T |
41525197 |
ggtgagtggctgtggtgaggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttcta |
41525295 |
T |
|
| Q |
169 |
gctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgag |
267 |
Q |
| |
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|||||||||| || |||||||| |||||||||| ||| |||||||||| ||||||| |||||||||||||||||| |||||||||| | ||| |||| |
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| T |
41525296 |
gctcttcagcaaatgctatgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaa |
41525395 |
T |
|
| Q |
268 |
agagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagct |
332 |
Q |
| |
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||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
41525396 |
agagagggagagaagtaatgttggtgggttgagagagtgtgagagttgatctatttataggagct |
41525460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 20964040 - 20963741
Alignment:
| Q |
3 |
tgggtcgggggtttagcannnnnnnnaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatg |
102 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
20964040 |
tgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggtg---------------tg |
20963956 |
T |
|
| Q |
103 |
gtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttc |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
20963955 |
gtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgctatgaaagaggttatttg |
20963856 |
T |
|
| Q |
203 |
gagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgag |
300 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||||| ||||| ||||||||| | |||||||| ||||||||||| || |||||||||||||||||| |
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|
| T |
20963855 |
gagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggattgatgttggtgtgttgag |
20963757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 14675143 - 14675257
Alignment:
| Q |
102 |
ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt |
201 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||| ||| |||||||||||||| |||||| |||||||| || || | | |||||||||||||| |
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| T |
14675143 |
ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt |
14675242 |
T |
|
| Q |
202 |
cgagaaagagaaaaa |
216 |
Q |
| |
|
||| |||||||||| |
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|
| T |
14675243 |
ggagtaagagaaaaa |
14675257 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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